Non-Coding RNA Search

rnca16b_n23.y1

Sequence:


               
               GGACCTCTGGAGTGGGATAAACCACTGCTGATGCCATGCACTCCGCCACCTTCTCCTAGC
CAACGTTTCTCACCCTTGGATGGGAGCACTACAAGGCAAGGAAATGTGCGGAAGGATAGG
CAAAAGGAGGATGACCCACAAATGGAATCATTAATTTCTCAAAAGTTGAGGGTAGGGTAA
GTAAAGTTTCAAAGGCTTAAGTCTATGTGACAGCTTTTTGTGACAGAGCTTAGGTGAGAG
ATGGTGACCTGTTAGATCATCACAGGTGTGCAACAGCGAAGTGGGCCCCAAAGATCTGGA
ACCTAGAGATGTTGCTTTTTACTCAATTCAGCATACGCCTTCTCTAGGAACTCTTCGGAC
GACCTGTCTAACCTGTCCTGCAGTGTGTGTGTGTGACGGTTAAATATGTGGTAATATTCA
CAGCAGGAAGAATGATTAGCTAGTTGTCTAGGGGATTTCTTTGTACTCTTATAAATCTGA
TCAAAGGAATCAATACACAAAAGTATTTACTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCTCTGGAGTGGGATAAACCACTGCTGATGCCATGCACTCCGCCACCTTCTCCTAGC
CAACGTTTCTCACCCTTGGATGGGAGCACTACAAGGCAAGGAAATGTGCGGAAGGATAGG
CAAAAGGAGGATGACCCACAAATGGAATCATTAATTTCTCAAAAGTTGAGGGTAGGGTAA
GTAAAGTTTCAAAGGCTTAAGTCTATGTGACAGCTTTTTGTGACAGAGCTTAGGTGAGAG
ATGGTGACCTGTTAGATCATCACAGGTGTGCAACAGCGAAGTGGGCCCCAAAGATCTGGA
ACCTAGAGATGTTGCTTTTTACTCAATTCAGCATACGCCTTCTCTAGGAACTCTTCGGAC
GACCTGTCTAACCTGTCCTGCAGTGTGTGTGTGTGACGGTTAAATATGTGGTAATATTCA
CAGCAGGAAGAATGATTAGCTAGTTGTCTAGGGGATTTCTTTGTACTCTTATAAATCTGA
TCAAAGGAATCAATACACAAAAGTATTTACTGGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               367-467, + strand, RNAz p=0.523919

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               367-467, + strand, RNAz p=0.523919

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               70-514, gnl|bosTau2|chr5 (21414921-21414473)
               

               
               70-514, gnl|Hg17|chr12 (50465199-50464714)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-514, gnl|bosTau2|chr5 (21414921-21414473)
               

               
               70-514, gnl|Hg17|chr12 (50465199-50464714)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	70-514, gnl\|bosTau2\|chr5 (21414921-21414473)
	70-514, gnl\|Hg17\|chr12 (50465199-50464714)