rnca17b_d24.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCCAGGCTCCAACGACGTGGAGATCCGGGCTGAGGGCAACAGCAGGTTCACGTATACT GTTCTGAAGGATGGCTGCACGAAACACACCGGTAAGTGGGGCCAGACTATGATCGAGTAC CGGTCACAGAAGACCTCTCGCCTCCCCATCATTGACATCGCGCCTATGGACATAGGAGGG CCCGAGCAGGAATTCGGTGTGGACATAGGGCCTGTCTGCTTCTTGTAAAAACCTGAACCC AGAAACAACACAATCCATTGCAAACCCAAAGGACCCAAGTACTTTCCAATCTCAGTCACT CTAGGACTCTGCACTGAATGGCTGACCTGACCTGATGTCCATTCATCCCACCTTCTCACA GTTTGGACTTTTCTCCCCTCTCTAAGAGACCTGAACTGGGCAGACTGCAAAATAAAATCT CGGTGTTCTATTTATTTATTGTCTTCCTGTAAGACCTTTGGGTCGAGGCAGAGGCAGGAA ACTAACTGGTGTGAGTCAAACGCCCCCTGAGTGACTGCCCCCCAGCCCAAGCAAGAGGAC CCCCTTCAGGTGCCGGGCGCAGGAACTGTGTGTGCCCTACACAATGGTGCTATTCTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCCAGGCTCCAACGACGTGGAGATCCGGGCTGAGGGCAACAGCAGGTTCACGTATACT GTTCTGAAGGATGGCTGCACGAAACACACCGGTAAGTGGGGCCAGACTATGATCGAGTAC CGGTCACAGAAGACCTCTCGCCTCCCCATCATTGACATCGCGCCTATGGACATAGGAGGG CCCGAGCAGGAATTCGGTGTGGACATAGGGCCTGTCTGCTTCTTGTAAAAACCTGAACCC AGAAACAACACAATCCATTGCAAACCCAAAGGACCCAAGTACTTTCCAATCTCAGTCACT CTAGGACTCTGCACTGAATGGCTGACCTGACCTGATGTCCATTCATCCCACCTTCTCACA GTTTGGACTTTTCTCCCCTCTCTAAGAGACCTGAACTGGGCAGACTGCAAAATAAAATCT CGGTGTTCTATTTATTTATTGTCTTCCTGTAAGACCTTTGGGTCGAGGCAGAGGCAGGAA ACTAACTGGTGTGAGTCAAACGCCCCCTGAGTGACTGCCCCCCAGCCCAAGCAAGAGGAC CCCCTTCAGGTGCCGGGCGCAGGAACTGTGTGTGCCCTACACAATGGTGCTATTCTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 433-551, - strand, RNAz p=0.607043 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 433-551, - strand, RNAz p=0.607043 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 81-599, gnl|bosTau2|chr5 (25498674-25498158) | |
| 81-599, gnl|Hg17|chr12 (46653604-46653082) | |
| 81-599, gnl|Mm7|chr15 (97979370-97978857) | |
| 85-234, gnl|bosTau2|chr19 (29188823-29188972) | |
| 85-234, gnl|canFam2|chr9 (29508453-29508626) | |
| 85-234, gnl|danRer3|chr3 (16142582-16142417) | |
| 85-234, gnl|dasNov1|scaffold_14458 (11023-10854) | |
| 85-234, gnl|echTel1|scaffold_300375 (4945-4769) | |
| 85-234, gnl|fr1|chrUn (49847429-49847589) | |
| 85-234, gnl|galGal2|chrUn (134207706-134207543) | |
| 85-234, gnl|hg17|chr17 (45617857-45618030) | |
| 85-234, gnl|Hg17|chr17 (45618005-45617856) | |
| 85-234, gnl|loxAfr1|scaffold_26320 (28835-28666) | |
| 85-234, gnl|mm7|chr11 (95060665-95060493) | |
| 85-234, gnl|Mm7|chr11 (95060515-95060664) | |
| 85-234, gnl|monDom2|scaffold_18 (43191566-43191389) | |
| 85-234, gnl|oryCun1|scaffold_213621 (9191-9023) | |
| 85-234, gnl|panTro1|chr19_random (31236402-31236575) | |
| 85-234, gnl|rheMac2|chr16 (34424096-34424269) | |
| 85-234, gnl|rn3|chr10 (83652392-83652220) | |
| 85-234, gnl|tetNig1|chr2 (681071-681233) | |
| 85-234, gnl|xenTro1|scaffold_316 (960682-960841) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-599, gnl|bosTau2|chr5 (25498674-25498158) | |
| 81-599, gnl|Hg17|chr12 (46653604-46653082) | |
| 81-599, gnl|Mm7|chr15 (97979370-97978857) | |
| 85-234, gnl|bosTau2|chr19 (29188823-29188972) | |
| 85-234, gnl|canFam2|chr9 (29508453-29508626) | |
| 85-234, gnl|danRer3|chr3 (16142582-16142417) | |
| 85-234, gnl|dasNov1|scaffold_14458 (11023-10854) | |
| 85-234, gnl|echTel1|scaffold_300375 (4945-4769) | |
| 85-234, gnl|fr1|chrUn (49847429-49847589) | |
| 85-234, gnl|galGal2|chrUn (134207706-134207543) | |
| 85-234, gnl|hg17|chr17 (45617857-45618030) | |
| 85-234, gnl|Hg17|chr17 (45618005-45617856) | |
| 85-234, gnl|loxAfr1|scaffold_26320 (28835-28666) | |
| 85-234, gnl|mm7|chr11 (95060665-95060493) | |
| 85-234, gnl|Mm7|chr11 (95060515-95060664) | |
| 85-234, gnl|monDom2|scaffold_18 (43191566-43191389) | |
| 85-234, gnl|oryCun1|scaffold_213621 (9191-9023) | |
| 85-234, gnl|panTro1|chr19_random (31236402-31236575) | |
| 85-234, gnl|rheMac2|chr16 (34424096-34424269) | |
| 85-234, gnl|rn3|chr10 (83652392-83652220) | |
| 85-234, gnl|tetNig1|chr2 (681071-681233) | |
| 85-234, gnl|xenTro1|scaffold_316 (960682-960841) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) |