Non-Coding RNA Search

rnca18b_d12.y1

Sequence:


               
               CTGCCCTGCTGACCAAGTGGCAAAGGATTATGGGGATTAATTATGAAATAGTGGTGGGTT
AGCTCACCTGCCCTAACTTCCTAACTCATGAACTGTATTTGAGCATGAAGTTCTTGACAG
TAATAAAGGTCACCATCGTGAAGAGTCCTAGAGAAGTAGTAAATGCCCAGGACTTTTTTT
TGAAGACCTAAATGTGCTGACTCAGATGTTAAAAAAATTCAAGTTGGAGAAAGTTGGGTG
GTAACCAAGGATGCTAAAATATATGGGATGGATGTTTTAGAACTTATACTCCACCCTTTC
TTCTGATAGTGGTGTGTATTTATTGATATAAACAAGGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCCTGCTGACCAAGTGGCAAAGGATTATGGGGATTAATTATGAAATAGTGGTGGGTT
AGCTCACCTGCCCTAACTTCCTAACTCATGAACTGTATTTGAGCATGAAGTTCTTGACAG
TAATAAAGGTCACCATCGTGAAGAGTCCTAGAGAAGTAGTAAATGCCCAGGACTTTTTTT
TGAAGACCTAAATGTGCTGACTCAGATGTTAAAAAAATTCAAGTTGGAGAAAGTTGGGTG
GTAACCAAGGATGCTAAAATATATGGGATGGATGTTTTAGAACTTATACTCCACCCTTTC
TTCTGATAGTGGTGTGTATTTATTGATATAAACAAGGGTT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-340, gnl|bosTau2|chr8 (14725341-14725704)
               

               
               1-340, gnl|canFam2|chr11 (36804650-36804976)
               

               
               1-340, gnl|dasNov1|scaffold_3127 (38523-38215)
               

               
               1-340, gnl|echTel1|scaffold_311279 (141005-141251)
               

               
               1-340, gnl|hg17|chr9 (13185745-13186043)
               

               
               1-340, gnl|Hg17|chr9 (13186172-13185834)
               

               
               1-340, gnl|loxAfr1|scaffold_12931 (10994-10782)
               

               
               1-340, gnl|mm7|chr4 (80769319-80769559)
               

               
               1-340, gnl|monDom2|scaffold_5 (101514567-101514298)
               

               
               1-340, gnl|oryCun1|scaffold_147991 (24064-24369)
               

               
               1-340, gnl|panTro1|chr11 (13381700-13382000)
               

               
               1-340, gnl|rheMac2|chr15 (63729007-63728706)
               

               
               1-340, gnl|rn3|chr5 (100110697-100110961)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-340, gnl|bosTau2|chr8 (14725341-14725704)
               

               
               1-340, gnl|canFam2|chr11 (36804650-36804976)
               

               
               1-340, gnl|dasNov1|scaffold_3127 (38523-38215)
               

               
               1-340, gnl|echTel1|scaffold_311279 (141005-141251)
               

               
               1-340, gnl|hg17|chr9 (13185745-13186043)
               

               
               1-340, gnl|Hg17|chr9 (13186172-13185834)
               

               
               1-340, gnl|loxAfr1|scaffold_12931 (10994-10782)
               

               
               1-340, gnl|mm7|chr4 (80769319-80769559)
               

               
               1-340, gnl|monDom2|scaffold_5 (101514567-101514298)
               

               
               1-340, gnl|oryCun1|scaffold_147991 (24064-24369)
               

               
               1-340, gnl|panTro1|chr11 (13381700-13382000)
               

               
               1-340, gnl|rheMac2|chr15 (63729007-63728706)
               

               
               1-340, gnl|rn3|chr5 (100110697-100110961)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	1-340, gnl\|bosTau2\|chr8 (14725341-14725704)
	1-340, gnl\|canFam2\|chr11 (36804650-36804976)
	1-340, gnl\|dasNov1\|scaffold_3127 (38523-38215)
	1-340, gnl\|echTel1\|scaffold_311279 (141005-141251)
	1-340, gnl\|hg17\|chr9 (13185745-13186043)
	1-340, gnl\|Hg17\|chr9 (13186172-13185834)
	1-340, gnl\|loxAfr1\|scaffold_12931 (10994-10782)
	1-340, gnl\|mm7\|chr4 (80769319-80769559)
	1-340, gnl\|monDom2\|scaffold_5 (101514567-101514298)
	1-340, gnl\|oryCun1\|scaffold_147991 (24064-24369)
	1-340, gnl\|panTro1\|chr11 (13381700-13382000)
	1-340, gnl\|rheMac2\|chr15 (63729007-63728706)
	1-340, gnl\|rn3\|chr5 (100110697-100110961)