Non-Coding RNA Search

rnca20b_j23.y1

Sequence:


               
               CTCATCTCAGAAGAGACAGACCTCATTGAACCTACGCTGCTGGACGAGCTTATCTGCTAC
ATCGGCACACTGGCCTCTGTCTACCACAAGCCACCCAGCGCCTTTGTGGAGGGGGGCCGG
GGCGTCGTGCACAAGAGCCTGCCGCCCCGCACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCTCAGAAGAGACAGACCTCATTGAACCTACGCTGCTGGACGAGCTTATCTGCTAC
ATCGGCACACTGGCCTCTGTCTACCACAAGCCACCCAGCGCCTTTGTGGAGGGGGGCCGG
GGCGTCGTGCACAAGAGCCTGCCGCCCCGCACCG

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               1-154, gnl|bosTau2|chr17 (39366349-39366196)
               

               
               1-154, gnl|canFam2|chr26 (25677758-25677914)
               

               
               1-154, gnl|danRer3|chr5 (14314183-14314028)
               

               
               1-154, gnl|dasNov1|scaffold_8146 (87597-87753)
               

               
               1-154, gnl|echTel1|scaffold_295808 (43809-43653)
               

               
               1-154, gnl|fr1|chrUn (2110781-2110625)
               

               
               1-154, gnl|galGal2|chr15 (11000700-11000544)
               

               
               1-154, gnl|hg17|chr22 (28062038-28062194)
               

               
               1-154, gnl|Hg17|chr22 (28062201-28062048)
               

               
               1-154, gnl|loxAfr1|scaffold_8358 (26441-26597)
               

               
               1-154, gnl|mm7|chr11 (4983900-4983744)
               

               
               1-154, gnl|Mm7|chr11 (4983735-4983888)
               

               
               1-154, gnl|monDom2|scaffold_89 (3139739-3139913)
               

               
               1-154, gnl|panTro1|chr23_random (8679769-8679925)
               

               
               1-154, gnl|rheMac2|chr10 (73168767-73168923)
               

               
               1-154, gnl|rn3|chr14 (85703805-85703649)
               

               
               1-154, gnl|tetNig1|chr12 (6677276-6677120)
               

               
               1-154, gnl|xenTro1|scaffold_207 (418391-418546)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr17 (39366349-39366196)
               

               
               1-154, gnl|canFam2|chr26 (25677758-25677914)
               

               
               1-154, gnl|danRer3|chr5 (14314183-14314028)
               

               
               1-154, gnl|dasNov1|scaffold_8146 (87597-87753)
               

               
               1-154, gnl|echTel1|scaffold_295808 (43809-43653)
               

               
               1-154, gnl|fr1|chrUn (2110781-2110625)
               

               
               1-154, gnl|galGal2|chr15 (11000700-11000544)
               

               
               1-154, gnl|hg17|chr22 (28062038-28062194)
               

               
               1-154, gnl|Hg17|chr22 (28062201-28062048)
               

               
               1-154, gnl|loxAfr1|scaffold_8358 (26441-26597)
               

               
               1-154, gnl|mm7|chr11 (4983900-4983744)
               

               
               1-154, gnl|Mm7|chr11 (4983735-4983888)
               

               
               1-154, gnl|monDom2|scaffold_89 (3139739-3139913)
               

               
               1-154, gnl|panTro1|chr23_random (8679769-8679925)
               

               
               1-154, gnl|rheMac2|chr10 (73168767-73168923)
               

               
               1-154, gnl|rn3|chr14 (85703805-85703649)
               

               
               1-154, gnl|tetNig1|chr12 (6677276-6677120)
               

               
               1-154, gnl|xenTro1|scaffold_207 (418391-418546)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nca (0.136874)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	1-154, gnl\|bosTau2\|chr17 (39366349-39366196)
	1-154, gnl\|canFam2\|chr26 (25677758-25677914)
	1-154, gnl\|danRer3\|chr5 (14314183-14314028)
	1-154, gnl\|dasNov1\|scaffold_8146 (87597-87753)
	1-154, gnl\|echTel1\|scaffold_295808 (43809-43653)
	1-154, gnl\|fr1\|chrUn (2110781-2110625)
	1-154, gnl\|galGal2\|chr15 (11000700-11000544)
	1-154, gnl\|hg17\|chr22 (28062038-28062194)
	1-154, gnl\|Hg17\|chr22 (28062201-28062048)
	1-154, gnl\|loxAfr1\|scaffold_8358 (26441-26597)
	1-154, gnl\|mm7\|chr11 (4983900-4983744)
	1-154, gnl\|Mm7\|chr11 (4983735-4983888)
	1-154, gnl\|monDom2\|scaffold_89 (3139739-3139913)
	1-154, gnl\|panTro1\|chr23_random (8679769-8679925)
	1-154, gnl\|rheMac2\|chr10 (73168767-73168923)
	1-154, gnl\|rn3\|chr14 (85703805-85703649)
	1-154, gnl\|tetNig1\|chr12 (6677276-6677120)
	1-154, gnl\|xenTro1\|scaffold_207 (418391-418546)