Non-Coding RNA Search

rnca23b_g21.y1

Sequence:


               
               GACTTCTAAGGACTTCTCTTCTGAAAAAGAAGAGACAGTCAACAGTGGGGAAAGGTGGCG
GTAAAATCACTTGACTTCACCTGTTGCTCTGTGAGGCGAGAGCTAACTCAACAACAGTCA
CTTGGCGCACTTTAGTAATCCGGGCCACCCCAGATTACACTCTAGATACTCCGCGGTATC
TAATCTTTATGATCAGTTGAATGATCAGTGTTTAAGTCTAGAAATAGTGCTTTCCTGAAA
AATGTTTATATTTCATGGCTGTTTCCTTATGGCCTGCTAGCCAAATGGAATTGGGGCCAG
CAACTGTTTGAATCTGGTTTTTTTCCCTAGTAATTTCCTTCTACCCAAACAATCATCACT
GTAAATAAGTAATCGAAGCGAGTTGCCACCTTGAAGAGGGATACACTTGGCTTCATCAGT
ATTAAAAACGATGGTACTCTTATTTGGTCTTTTAAAATTCAAGACATTTTCTAAATGTGG
TACTTTGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTCTAAGGACTTCTCTTCTGAAAAAGAAGAGACAGTCAACAGTGGGGAAAGGTGGCG
GTAAAATCACTTGACTTCACCTGTTGCTCTGTGAGGCGAGAGCTAACTCAACAACAGTCA
CTTGGCGCACTTTAGTAATCCGGGCCACCCCAGATTACACTCTAGATACTCCGCGGTATC
TAATCTTTATGATCAGTTGAATGATCAGTGTTTAAGTCTAGAAATAGTGCTTTCCTGAAA
AATGTTTATATTTCATGGCTGTTTCCTTATGGCCTGCTAGCCAAATGGAATTGGGGCCAG
CAACTGTTTGAATCTGGTTTTTTTCCCTAGTAATTTCCTTCTACCCAAACAATCATCACT
GTAAATAAGTAATCGAAGCGAGTTGCCACCTTGAAGAGGGATACACTTGGCTTCATCAGT
ATTAAAAACGATGGTACTCTTATTTGGTCTTTTAAAATTCAAGACATTTTCTAAATGTGG
TACTTTGAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               91-248, + strand, RNAz p=0.961833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-248, + strand, RNAz p=0.961833

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               91-490, gnl|bosTau2|chr1 (79487156-79486755)
               

               
               91-490, gnl|Hg17|chr3 (142814742-142815142)
               

               
               91-490, gnl|Mm7|chr9 (96183237-96182847)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-490, gnl|bosTau2|chr1 (79487156-79486755)
               

               
               91-490, gnl|Hg17|chr3 (142814742-142815142)
               

               
               91-490, gnl|Mm7|chr9 (96183237-96182847)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	91-490, gnl\|bosTau2\|chr1 (79487156-79486755)
	91-490, gnl\|Hg17\|chr3 (142814742-142815142)
	91-490, gnl\|Mm7\|chr9 (96183237-96182847)