Non-Coding RNA Search

rnca26b_f8.y1

Sequence:


               
               GGCTGGCCGCGCTCCGCAACGTGTCCGGCGCACAGTACGTGGGCTCCGGCTACACCAAGG
CCGTGTACCGGGTCCGCCTGCCCGGCGGCGCCGCGGTGGCGCTCAAGGCGGTGGACTTCA
GCGGCCACGATCTGGGCAGCTGCGTGCGCGAGTTCGGGGCGCGAAGGGGCTGCTATCGGC
TGGCGGCCCACAAGCTTCTCAAGGAGATGGTGCTGCTGGAGCGGCTGCGGCACCCCAACG
TGCTGCAGCTCTATGGCTACTGCTACCAAGACAGCGAAGACATCCCCGACACCCTGACCA
CCATCACGGAGCTGGGCGCCCCTGTGGAAATGATCCAGCTGCTGCAGACTTCCTGGGAGG
ATCGATTCCGAATCTGCCTGAGCCTGGGCCGCCTCCTCCACCACCTGGCCCACTCCCCGC
TGGGCTCGGTCACTCTGCTGGACTTCCGCCCCCGACAGTTTGTGCTGGTAGATGGGGAGC
TGAAGGTGACGGATCTGGATGACGCCCGCGTGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGCCGCGCTCCGCAACGTGTCCGGCGCACAGTACGTGGGCTCCGGCTACACCAAGG
CCGTGTACCGGGTCCGCCTGCCCGGCGGCGCCGCGGTGGCGCTCAAGGCGGTGGACTTCA
GCGGCCACGATCTGGGCAGCTGCGTGCGCGAGTTCGGGGCGCGAAGGGGCTGCTATCGGC
TGGCGGCCCACAAGCTTCTCAAGGAGATGGTGCTGCTGGAGCGGCTGCGGCACCCCAACG
TGCTGCAGCTCTATGGCTACTGCTACCAAGACAGCGAAGACATCCCCGACACCCTGACCA
CCATCACGGAGCTGGGCGCCCCTGTGGAAATGATCCAGCTGCTGCAGACTTCCTGGGAGG
ATCGATTCCGAATCTGCCTGAGCCTGGGCCGCCTCCTCCACCACCTGGCCCACTCCCCGC
TGGGCTCGGTCACTCTGCTGGACTTCCGCCCCCGACAGTTTGTGCTGGTAGATGGGGAGC
TGAAGGTGACGGATCTGGATGACGCCCGCGTGGAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               130-248, + strand, RNAz p=0.892064

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-248, + strand, RNAz p=0.892064

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC094697, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC094697, +

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               1-248, gnl|bosTau2|chr11 (18258165-18257917)
               

               
               1-248, gnl|Hg17|chr2 (42187381-42187629)
               

               
               1-248, gnl|Mm7|chr17 (81510304-81510552)
               


               
               372-514, gnl|bosTau2|chr11 (18253120-18252978)
               

               
               372-514, gnl|canFam2|chr17 (36772492-36772793)
               

               
               372-514, gnl|danRer3|chr13 (1132190-1131886)
               

               
               372-514, gnl|dasNov1|scaffold_100536 (4535-4232)
               

               
               372-514, gnl|echTel1|scaffold_159036 (2599-2900)
               

               
               372-514, gnl|fr1|chrUn (119644351-119644064)
               

               
               372-514, gnl|galGal2|chr3 (19676458-19676744)
               

               
               372-514, gnl|hg17|chr2 (42192815-42193116)
               

               
               372-514, gnl|Hg17|chr2 (42192827-42192969)
               

               
               372-514, gnl|mm7|chr17 (81515400-81515700)
               

               
               372-514, gnl|Mm7|chr17 (81515414-81515556)
               

               
               372-514, gnl|monDom2|scaffold_1 (40729-41029)
               

               
               372-514, gnl|oryCun1|scaffold_205116 (60691-60390)
               

               
               372-514, gnl|panTro1|chr12 (43757660-43757961)
               

               
               372-514, gnl|rheMac2|chr13 (42158122-42158423)
               

               
               372-514, gnl|rn3|chr6 (6559516-6559813)
               

               
               372-514, gnl|tetNig1|chr10 (5759289-5759006)
               

               
               372-514, gnl|xenTro1|scaffold_30 (429315-429617)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-248, gnl|bosTau2|chr11 (18258165-18257917)
               

               
               1-248, gnl|Hg17|chr2 (42187381-42187629)
               

               
               1-248, gnl|Mm7|chr17 (81510304-81510552)
               


               
               372-514, gnl|bosTau2|chr11 (18253120-18252978)
               

               
               372-514, gnl|canFam2|chr17 (36772492-36772793)
               

               
               372-514, gnl|danRer3|chr13 (1132190-1131886)
               

               
               372-514, gnl|dasNov1|scaffold_100536 (4535-4232)
               

               
               372-514, gnl|echTel1|scaffold_159036 (2599-2900)
               

               
               372-514, gnl|fr1|chrUn (119644351-119644064)
               

               
               372-514, gnl|galGal2|chr3 (19676458-19676744)
               

               
               372-514, gnl|hg17|chr2 (42192815-42193116)
               

               
               372-514, gnl|Hg17|chr2 (42192827-42192969)
               

               
               372-514, gnl|mm7|chr17 (81515400-81515700)
               

               
               372-514, gnl|Mm7|chr17 (81515414-81515556)
               

               
               372-514, gnl|monDom2|scaffold_1 (40729-41029)
               

               
               372-514, gnl|oryCun1|scaffold_205116 (60691-60390)
               

               
               372-514, gnl|panTro1|chr12 (43757660-43757961)
               

               
               372-514, gnl|rheMac2|chr13 (42158122-42158423)
               

               
               372-514, gnl|rn3|chr6 (6559516-6559813)
               

               
               372-514, gnl|tetNig1|chr10 (5759289-5759006)
               

               
               372-514, gnl|xenTro1|scaffold_30 (429315-429617)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nca (0.136874)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	1-248, gnl\|bosTau2\|chr11 (18258165-18257917)
	1-248, gnl\|Hg17\|chr2 (42187381-42187629)
	1-248, gnl\|Mm7\|chr17 (81510304-81510552)

	372-514, gnl\|bosTau2\|chr11 (18253120-18252978)
	372-514, gnl\|canFam2\|chr17 (36772492-36772793)
	372-514, gnl\|danRer3\|chr13 (1132190-1131886)
	372-514, gnl\|dasNov1\|scaffold_100536 (4535-4232)
	372-514, gnl\|echTel1\|scaffold_159036 (2599-2900)
	372-514, gnl\|fr1\|chrUn (119644351-119644064)
	372-514, gnl\|galGal2\|chr3 (19676458-19676744)
	372-514, gnl\|hg17\|chr2 (42192815-42193116)
	372-514, gnl\|Hg17\|chr2 (42192827-42192969)
	372-514, gnl\|mm7\|chr17 (81515400-81515700)
	372-514, gnl\|Mm7\|chr17 (81515414-81515556)
	372-514, gnl\|monDom2\|scaffold_1 (40729-41029)
	372-514, gnl\|oryCun1\|scaffold_205116 (60691-60390)
	372-514, gnl\|panTro1\|chr12 (43757660-43757961)
	372-514, gnl\|rheMac2\|chr13 (42158122-42158423)
	372-514, gnl\|rn3\|chr6 (6559516-6559813)
	372-514, gnl\|tetNig1\|chr10 (5759289-5759006)
	372-514, gnl\|xenTro1\|scaffold_30 (429315-429617)