rnca34b_m5.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCAGCAATCATGATTACGTACCCATCCACCAATGGAGTATTTGAAGAGAACATGGGA GACGTGTGTGACCTGATCCACCAACACGGAGGACAGGTCTACCTGGATGGGGCAAATATG AACGCTCAGGTGGGAATCTGTCGTCCTGGAGACTTTGGGTCTGATGTCTCACATCTAAAT CTTCACAAGACCTTCTGCATTCCCCACGGAGGAGGCGGCCCTGGCATGGGGCCCATCGGA GTGAAGAAGCATCTTGTCCCTTTCCTGCCGAATCATCCCATCATTTCAGTAAAGCCAAGC GAAGATGCCCAGCCTTGGGGTACTGTCAGCGCGGCCCCATGGGGCTCCAGCTCCATCTTG CCCATTTCCTGGGCTTATATAAAGATGATGGGAGGCAAAGGCCTTAAACAAGCCACAGAA ATGGCTATATTAAATGCCAACTACATGGCCAAGAGATTAGAAAAACACTACAGAGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCAGCAATCATGATTACGTACCCATCCACCAATGGAGTATTTGAAGAGAACATGGGA GACGTGTGTGACCTGATCCACCAACACGGAGGACAGGTCTACCTGGATGGGGCAAATATG AACGCTCAGGTGGGAATCTGTCGTCCTGGAGACTTTGGGTCTGATGTCTCACATCTAAAT CTTCACAAGACCTTCTGCATTCCCCACGGAGGAGGCGGCCCTGGCATGGGGCCCATCGGA GTGAAGAAGCATCTTGTCCCTTTCCTGCCGAATCATCCCATCATTTCAGTAAAGCCAAGC GAAGATGCCCAGCCTTGGGGTACTGTCAGCGCGGCCCCATGGGGCTCCAGCTCCATCTTG CCCATTTCCTGGGCTTATATAAAGATGATGGGAGGCAAAGGCCTTAAACAAGCCACAGAA ATGGCTATATTAAATGCCAACTACATGGCCAAGAGATTAGAAAAACACTACAGAGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 2-140, - strand, RNAz p=0.93435 | |
| 271-388, + strand, RNAz p=0.740771 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-140, - strand, RNAz p=0.93435 | |
| 271-388, + strand, RNAz p=0.740771 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 2-140, gnl|bosTau2|chr8 (19063984-19064123) | |
| 2-140, gnl|canFam2|chr11 (30531629-30531481) | |
| 2-140, gnl|danRer3|chr5 (72646177-72646325) | |
| 2-140, gnl|dasNov1|scaffold_46164 (8228-8080) | |
| 2-140, gnl|echTel1|scaffold_263053 (2193-2341) | |
| 2-140, gnl|fr1|chrUn (213455914-213456062) | |
| 2-140, gnl|galGal2|chrZ (12143058-12142910) | |
| 2-140, gnl|hg17|chr4 (57301804-57301952) | |
| 2-140, gnl|Hg17|chr9 (6546280-6546117) | |
| 2-140, gnl|loxAfr1|scaffold_161234 (428-576) | |
| 2-140, gnl|monDom2|scaffold_5 (110048122-110048270) | |
| 2-140, gnl|oryCun1|scaffold_31947 (579-434) | |
| 2-140, gnl|panTro1|chr3 (89327054-89326906) | |
| 2-140, gnl|rheMac2|chr15 (70598789-70598934) | |
| 2-140, gnl|rn3|chr1 (234027235-234027090) | |
| 2-140, gnl|tetNig1|chr12 (5219995-5220139) | |
| 2-140, gnl|xenTro1|scaffold_52 (1749881-1750029) | |
| 243-388, gnl|bosTau2|chr8 (19067720-19067865) | |
| 243-388, gnl|canFam2|chr11 (30528468-30528330) | |
| 243-388, gnl|canFam2|chr11 (30528309-30528473) | |
| 243-388, gnl|danRer3|chr5 (72655238-72655376) | |
| 243-388, gnl|danRer3|chr5 (72655383-72655231) | |
| 243-388, gnl|echTel1|scaffold_263053 (5174-5314) | |
| 243-388, gnl|echTel1|scaffold_263053 (5326-5165) | |
| 243-388, gnl|fr1|chrUn (213456478-213456616) | |
| 243-388, gnl|fr1|chrUn (213456636-213456473) | |
| 243-388, gnl|galGal2|chrZ (12141675-12141535) | |
| 243-388, gnl|galGal2|chrZ (12141532-12141678) | |
| 243-388, gnl|hg17|chr4 (57302068-57302208) | |
| 243-388, gnl|hg17|chr9 (6543349-6543516) | |
| 243-388, gnl|Hg17|chr9 (6543509-6543364) | |
| 243-388, gnl|loxAfr1|scaffold_161234 (4669-4809) | |
| 243-388, gnl|loxAfr1|scaffold_161234 (4822-4660) | |
| 243-388, gnl|mm7|chr19 (29813707-29813567) | |
| 243-388, gnl|mm7|chr19 (29813548-29813714) | |
| 243-388, gnl|Mm7|chr19 (29813707-29813562) | |
| 243-388, gnl|monDom2|scaffold_5 (110056044-110056184) | |
| 243-388, gnl|monDom2|scaffold_5 (110056204-110056035) | |
| 243-388, gnl|oryCun1|scaffold_206121 (39825-39685) | |
| 243-388, gnl|oryCun1|scaffold_206121 (39665-39832) | |
| 243-388, gnl|panTro1|chr11 (6472737-6472906) | |
| 243-388, gnl|panTro1|chr3 (89326790-89326650) | |
| 243-388, gnl|rheMac2|chr15 (70601606-70601744) | |
| 243-388, gnl|rheMac2|chr15 (70601766-70601597) | |
| 243-388, gnl|rn3|chr1 (234024451-234024313) | |
| 243-388, gnl|rn3|chr1 (234024292-234024458) | |
| 243-388, gnl|tetNig1|chr12 (5220871-5221003) | |
| 243-388, gnl|tetNig1|chr12 (5221010-5220866) | |
| 243-388, gnl|xenTro1|scaffold_52 (1750817-1750952) | |
| 243-388, gnl|xenTro1|scaffold_52 (1750956-1750811) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-140, gnl|bosTau2|chr8 (19063984-19064123) | |
| 2-140, gnl|canFam2|chr11 (30531629-30531481) | |
| 2-140, gnl|danRer3|chr5 (72646177-72646325) | |
| 2-140, gnl|dasNov1|scaffold_46164 (8228-8080) | |
| 2-140, gnl|echTel1|scaffold_263053 (2193-2341) | |
| 2-140, gnl|fr1|chrUn (213455914-213456062) | |
| 2-140, gnl|galGal2|chrZ (12143058-12142910) | |
| 2-140, gnl|hg17|chr4 (57301804-57301952) | |
| 2-140, gnl|Hg17|chr9 (6546280-6546117) | |
| 2-140, gnl|loxAfr1|scaffold_161234 (428-576) | |
| 2-140, gnl|monDom2|scaffold_5 (110048122-110048270) | |
| 2-140, gnl|oryCun1|scaffold_31947 (579-434) | |
| 2-140, gnl|panTro1|chr3 (89327054-89326906) | |
| 2-140, gnl|rheMac2|chr15 (70598789-70598934) | |
| 2-140, gnl|rn3|chr1 (234027235-234027090) | |
| 2-140, gnl|tetNig1|chr12 (5219995-5220139) | |
| 2-140, gnl|xenTro1|scaffold_52 (1749881-1750029) | |
| 243-388, gnl|bosTau2|chr8 (19067720-19067865) | |
| 243-388, gnl|canFam2|chr11 (30528468-30528330) | |
| 243-388, gnl|canFam2|chr11 (30528309-30528473) | |
| 243-388, gnl|danRer3|chr5 (72655238-72655376) | |
| 243-388, gnl|danRer3|chr5 (72655383-72655231) | |
| 243-388, gnl|echTel1|scaffold_263053 (5174-5314) | |
| 243-388, gnl|echTel1|scaffold_263053 (5326-5165) | |
| 243-388, gnl|fr1|chrUn (213456478-213456616) | |
| 243-388, gnl|fr1|chrUn (213456636-213456473) | |
| 243-388, gnl|galGal2|chrZ (12141675-12141535) | |
| 243-388, gnl|galGal2|chrZ (12141532-12141678) | |
| 243-388, gnl|hg17|chr4 (57302068-57302208) | |
| 243-388, gnl|hg17|chr9 (6543349-6543516) | |
| 243-388, gnl|Hg17|chr9 (6543509-6543364) | |
| 243-388, gnl|loxAfr1|scaffold_161234 (4669-4809) | |
| 243-388, gnl|loxAfr1|scaffold_161234 (4822-4660) | |
| 243-388, gnl|mm7|chr19 (29813707-29813567) | |
| 243-388, gnl|mm7|chr19 (29813548-29813714) | |
| 243-388, gnl|Mm7|chr19 (29813707-29813562) | |
| 243-388, gnl|monDom2|scaffold_5 (110056044-110056184) | |
| 243-388, gnl|monDom2|scaffold_5 (110056204-110056035) | |
| 243-388, gnl|oryCun1|scaffold_206121 (39825-39685) | |
| 243-388, gnl|oryCun1|scaffold_206121 (39665-39832) | |
| 243-388, gnl|panTro1|chr11 (6472737-6472906) | |
| 243-388, gnl|panTro1|chr3 (89326790-89326650) | |
| 243-388, gnl|rheMac2|chr15 (70601606-70601744) | |
| 243-388, gnl|rheMac2|chr15 (70601766-70601597) | |
| 243-388, gnl|rn3|chr1 (234024451-234024313) | |
| 243-388, gnl|rn3|chr1 (234024292-234024458) | |
| 243-388, gnl|tetNig1|chr12 (5220871-5221003) | |
| 243-388, gnl|tetNig1|chr12 (5221010-5220866) | |
| 243-388, gnl|xenTro1|scaffold_52 (1750817-1750952) | |
| 243-388, gnl|xenTro1|scaffold_52 (1750956-1750811) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) |