rnca34b_o11.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTTTGTTGCTTGTATGGCTACTGTCATTCACTTACAAAAATTGAAGGAGTGCTCTCTG GTGATCCACTTGATTTGAAAATGTTTGAAGCCATGGATGGATTCTGGAGGAAGCAACTGA AGAGGAAACAGCACTTCATAATCGAATTATGCCCACTGTGGTTCGTCCTCCAAAACAGCT GCTTCCTGAATCTACACCTGGAGGAAACCAAGAAATGGAGCTGTTTGAACTTCCGGCTGT TTATGAGATGGGCATTGTTCGCCAGTTCCCATTTTCTTCAGCTTTGCAACGAATGAGCGT GGTTGCGAGGGTGCTGGGGGACAGGAAGATGGATGCTTACATGAAAGGGGCACCGGAGGC TGTTGCCAGTCTTTGTAAACCTGAAACAGTTCCTGTTGATTTCGAAAAAGTTTTAGAAGA TTACACCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTTTGTTGCTTGTATGGCTACTGTCATTCACTTACAAAAATTGAAGGAGTGCTCTCTG GTGATCCACTTGATTTGAAAATGTTTGAAGCCATGGATGGATTCTGGAGGAAGCAACTGA AGAGGAAACAGCACTTCATAATCGAATTATGCCCACTGTGGTTCGTCCTCCAAAACAGCT GCTTCCTGAATCTACACCTGGAGGAAACCAAGAAATGGAGCTGTTTGAACTTCCGGCTGT TTATGAGATGGGCATTGTTCGCCAGTTCCCATTTTCTTCAGCTTTGCAACGAATGAGCGT GGTTGCGAGGGTGCTGGGGGACAGGAAGATGGATGCTTACATGAAAGGGGCACCGGAGGC TGTTGCCAGTCTTTGTAAACCTGAAACAGTTCCTGTTGATTTCGAAAAAGTTTTAGAAGA TTACACCAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 100-218, - strand, RNAz p=0.938169 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 100-218, - strand, RNAz p=0.938169 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 105-210, - strand, RNAmicro p=0.999931 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 100-218, gnl|bosTau2|chr1 (45342302-45342420) | |
| 100-218, gnl|canFam2|chr33 (34302148-34302006) | |
| 100-218, gnl|danRer3|chrNA (157775876-157776036) | |
| 100-218, gnl|echTel1|scaffold_260346 (2371-2225) | |
| 100-218, gnl|fr1|chrUn (33636241-33636394) | |
| 100-218, gnl|galGal2|chr9 (12287390-12287260) | |
| 100-218, gnl|hg17|chr3 (195640878-195641045) | |
| 100-218, gnl|Hg17|chr3 (195640999-195640881) | |
| 100-218, gnl|loxAfr1|scaffold_98019 (757-606) | |
| 100-218, gnl|mm7|chr16 (30017684-30017824) | |
| 100-218, gnl|Mm7|chr16 (30017805-30017687) | |
| 100-218, gnl|monDom2|scaffold_229 (522901-522757) | |
| 100-218, gnl|panTro1|chr2 (199767495-199767659) | |
| 100-218, gnl|rheMac2|chr2 (186659752-186659902) | |
| 100-218, gnl|rn3|chr11 (72364684-72364550) | |
| 100-218, gnl|tetNig1|chr1 (12346159-12346291) | |
| 100-218, gnl|xenTro1|scaffold_344 (56642-56800) | |
| 224-389, gnl|bosTau2|chr1 (45343178-45343346) | |
| 224-389, gnl|canFam2|chr33 (34303680-34303391) | |
| 224-389, gnl|danRer3|chrNA (157774652-157774959) | |
| 224-389, gnl|dasNov1|scaffold_248080 (3358-3647) | |
| 224-389, gnl|echTel1|scaffold_260346 (3194-2917) | |
| 224-389, gnl|fr1|chrUn (33635768-33636103) | |
| 224-389, gnl|galGal2|chr9 (12288612-12288304) | |
| 224-389, gnl|hg17|chr3 (195639331-195639617) | |
| 224-389, gnl|Hg17|chr3 (195639505-195639337) | |
| 224-389, gnl|loxAfr1|scaffold_27630 (74536-74247) | |
| 224-389, gnl|mm7|chr16 (30016803-30017088) | |
| 224-389, gnl|Mm7|chr16 (30016977-30016809) | |
| 224-389, gnl|monDom2|scaffold_229 (523329-523036) | |
| 224-389, gnl|oryCun1|scaffold_134571 (16308-16588) | |
| 224-389, gnl|panTro1|chr2 (199765949-199766235) | |
| 224-389, gnl|rheMac2|chr2 (186658227-186658513) | |
| 224-389, gnl|rn3|chr11 (72365483-72365198) | |
| 224-389, gnl|tetNig1|chr1 (12345701-12346016) | |
| 224-389, gnl|xenTro1|scaffold_344 (50175-50437) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 100-218, gnl|bosTau2|chr1 (45342302-45342420) | |
| 100-218, gnl|canFam2|chr33 (34302148-34302006) | |
| 100-218, gnl|danRer3|chrNA (157775876-157776036) | |
| 100-218, gnl|echTel1|scaffold_260346 (2371-2225) | |
| 100-218, gnl|fr1|chrUn (33636241-33636394) | |
| 100-218, gnl|galGal2|chr9 (12287390-12287260) | |
| 100-218, gnl|hg17|chr3 (195640878-195641045) | |
| 100-218, gnl|Hg17|chr3 (195640999-195640881) | |
| 100-218, gnl|loxAfr1|scaffold_98019 (757-606) | |
| 100-218, gnl|mm7|chr16 (30017684-30017824) | |
| 100-218, gnl|Mm7|chr16 (30017805-30017687) | |
| 100-218, gnl|monDom2|scaffold_229 (522901-522757) | |
| 100-218, gnl|panTro1|chr2 (199767495-199767659) | |
| 100-218, gnl|rheMac2|chr2 (186659752-186659902) | |
| 100-218, gnl|rn3|chr11 (72364684-72364550) | |
| 100-218, gnl|tetNig1|chr1 (12346159-12346291) | |
| 100-218, gnl|xenTro1|scaffold_344 (56642-56800) | |
| 224-389, gnl|bosTau2|chr1 (45343178-45343346) | |
| 224-389, gnl|canFam2|chr33 (34303680-34303391) | |
| 224-389, gnl|danRer3|chrNA (157774652-157774959) | |
| 224-389, gnl|dasNov1|scaffold_248080 (3358-3647) | |
| 224-389, gnl|echTel1|scaffold_260346 (3194-2917) | |
| 224-389, gnl|fr1|chrUn (33635768-33636103) | |
| 224-389, gnl|galGal2|chr9 (12288612-12288304) | |
| 224-389, gnl|hg17|chr3 (195639331-195639617) | |
| 224-389, gnl|Hg17|chr3 (195639505-195639337) | |
| 224-389, gnl|loxAfr1|scaffold_27630 (74536-74247) | |
| 224-389, gnl|mm7|chr16 (30016803-30017088) | |
| 224-389, gnl|Mm7|chr16 (30016977-30016809) | |
| 224-389, gnl|monDom2|scaffold_229 (523329-523036) | |
| 224-389, gnl|oryCun1|scaffold_134571 (16308-16588) | |
| 224-389, gnl|panTro1|chr2 (199765949-199766235) | |
| 224-389, gnl|rheMac2|chr2 (186658227-186658513) | |
| 224-389, gnl|rn3|chr11 (72365483-72365198) | |
| 224-389, gnl|tetNig1|chr1 (12345701-12346016) | |
| 224-389, gnl|xenTro1|scaffold_344 (50175-50437) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) |