Non-Coding RNA Search

rnco1901b_j6.y1

Sequence:


               
               GGGAAGCGGAGTTTGCGTTAGACACCTGGAATCCAGCTCGGTGCGTTCTAAGCGGAGCTG
GCAGAGGCAGTGGAGGACCCGGGGAGCGCTCCCAACGAACATGAGGCAAGGAGAAGCCAC
CTTCATGGAGGAGCGCCGGGCGCGGGAGAACCGGCTGAACCAGCAGAAGAGGCTGATAGA
CAAGCTCCACACGAAGGAGACCAGCGAGAGGTCCCGCCGGGGCCGCCGGGACTTGGACTT
CTCCTCCAACCAGATGGGTCCAGAAACTCTGAAAGTGAGGAAGAGAGACAGCTCCAAGGC
TGCTGTCAAATACCAGACGGACGTGATGGCCTTGGTGGAGAGAGTCAAGGCGGCCGTGCA
CTGCTCCCACCTCTGGGACATCACTGGCCGGTTCCTGGCTCAGAGGAACACGGAGGAGAA
CCTGCAGCTGCAGATGGAGGACTGCGAGGAGAGGCGGGCACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAGCGGAGTTTGCGTTAGACACCTGGAATCCAGCTCGGTGCGTTCTAAGCGGAGCTG
GCAGAGGCAGTGGAGGACCCGGGGAGCGCTCCCAACGAACATGAGGCAAGGAGAAGCCAC
CTTCATGGAGGAGCGCCGGGCGCGGGAGAACCGGCTGAACCAGCAGAAGAGGCTGATAGA
CAAGCTCCACACGAAGGAGACCAGCGAGAGGTCCCGCCGGGGCCGCCGGGACTTGGACTT
CTCCTCCAACCAGATGGGTCCAGAAACTCTGAAAGTGAGGAAGAGAGACAGCTCCAAGGC
TGCTGTCAAATACCAGACGGACGTGATGGCCTTGGTGGAGAGAGTCAAGGCGGCCGTGCA
CTGCTCCCACCTCTGGGACATCACTGGCCGGTTCCTGGCTCAGAGGAACACGGAGGAGAA
CCTGCAGCTGCAGATGGAGGACTGCGAGGAGAGGCGGGCACAGC

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               91-221, gnl|bosTau2|chr11 (86189571-86189702)
               

               
               91-221, gnl|canFam2|chr9 (52104208-52103901)
               

               
               91-221, gnl|dasNov1|scaffold_38731 (5570-5871)
               

               
               91-221, gnl|echTel1|scaffold_212065 (3711-3371)
               

               
               91-221, gnl|hg17|chr9 (136974777-136975121)
               

               
               91-221, gnl|Hg17|chr9 (136974786-136974917)
               

               
               91-221, gnl|loxAfr1|scaffold_156593 (4896-4575)
               

               
               91-221, gnl|mm7|chr2 (25619521-25619230)
               

               
               91-221, gnl|Mm7|chr2 (25619510-25619379)
               

               
               91-221, gnl|monDom2|scaffold_1 (188690849-188690452)
               

               
               91-221, gnl|panTro1|chr11 (121736906-121737250)
               

               
               91-221, gnl|rheMac2|chr15 (1455097-1454754)
               

               
               91-221, gnl|rn3|chr3 (3783836-3783528)
               


               
               274-398, gnl|bosTau2|chr11 (86190356-86190479)
               

               
               274-398, gnl|Hg17|chr9 (136975644-136975768)
               

               
               274-398, gnl|Mm7|chr2 (25618859-25618736)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-221, gnl|bosTau2|chr11 (86189571-86189702)
               

               
               91-221, gnl|canFam2|chr9 (52104208-52103901)
               

               
               91-221, gnl|dasNov1|scaffold_38731 (5570-5871)
               

               
               91-221, gnl|echTel1|scaffold_212065 (3711-3371)
               

               
               91-221, gnl|hg17|chr9 (136974777-136975121)
               

               
               91-221, gnl|Hg17|chr9 (136974786-136974917)
               

               
               91-221, gnl|loxAfr1|scaffold_156593 (4896-4575)
               

               
               91-221, gnl|mm7|chr2 (25619521-25619230)
               

               
               91-221, gnl|Mm7|chr2 (25619510-25619379)
               

               
               91-221, gnl|monDom2|scaffold_1 (188690849-188690452)
               

               
               91-221, gnl|panTro1|chr11 (121736906-121737250)
               

               
               91-221, gnl|rheMac2|chr15 (1455097-1454754)
               

               
               91-221, gnl|rn3|chr3 (3783836-3783528)
               


               
               274-398, gnl|bosTau2|chr11 (86190356-86190479)
               

               
               274-398, gnl|Hg17|chr9 (136975644-136975768)
               

               
               274-398, gnl|Mm7|chr2 (25618859-25618736)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nco (0.161734)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	91-221, gnl\|bosTau2\|chr11 (86189571-86189702)
	91-221, gnl\|canFam2\|chr9 (52104208-52103901)
	91-221, gnl\|dasNov1\|scaffold_38731 (5570-5871)
	91-221, gnl\|echTel1\|scaffold_212065 (3711-3371)
	91-221, gnl\|hg17\|chr9 (136974777-136975121)
	91-221, gnl\|Hg17\|chr9 (136974786-136974917)
	91-221, gnl\|loxAfr1\|scaffold_156593 (4896-4575)
	91-221, gnl\|mm7\|chr2 (25619521-25619230)
	91-221, gnl\|Mm7\|chr2 (25619510-25619379)
	91-221, gnl\|monDom2\|scaffold_1 (188690849-188690452)
	91-221, gnl\|panTro1\|chr11 (121736906-121737250)
	91-221, gnl\|rheMac2\|chr15 (1455097-1454754)
	91-221, gnl\|rn3\|chr3 (3783836-3783528)

	274-398, gnl\|bosTau2\|chr11 (86190356-86190479)
	274-398, gnl\|Hg17\|chr9 (136975644-136975768)
	274-398, gnl\|Mm7\|chr2 (25618859-25618736)