Non-Coding RNA Search

rnco1904b_k7.y1

Sequence:


               
               GACCCCTCCAGCAGCGCCGTGAGCACCACTGGCTCTGGGGACACCGAGCAAACCTATACC
TTCCACGGGGCCCTCAAAGAGGGGCCTGGCTCCCTCTTCATCCACATGAAGAGCATCCTG
AAGGGGACCAGGAGGCCCAATGCCCTCCAGCACCCAGAGGCCCTGACAGAGCTGACGCTG
GAGCCAGCTGACTCGCTGGCCAAGAAGAAGCAGGTACACTTTGAGGACAGCGTGGTCAGA
ATCATTCCAGCCCTGGCTGAAGGCCTGGAGGATGGGGACAGCGAGCCTGAGGAGACCACC
TCTGACACCACCCCCATCATCCCTCCCCCCGAGGCCCCACCCTTCCTATCTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCCTCCAGCAGCGCCGTGAGCACCACTGGCTCTGGGGACACCGAGCAAACCTATACC
TTCCACGGGGCCCTCAAAGAGGGGCCTGGCTCCCTCTTCATCCACATGAAGAGCATCCTG
AAGGGGACCAGGAGGCCCAATGCCCTCCAGCACCCAGAGGCCCTGACAGAGCTGACGCTG
GAGCCAGCTGACTCGCTGGCCAAGAAGAAGCAGGTACACTTTGAGGACAGCGTGGTCAGA
ATCATTCCAGCCCTGGCTGAAGGCCTGGAGGATGGGGACAGCGAGCCTGAGGAGACCACC
TCTGACACCACCCCCATCATCCCTCCCCCCGAGGCCCCACCCTTCCTATCTTCCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-199, - strand, RNAz p=0.785402
               

               
               237-355, - strand, RNAz p=0.587999
               

               
               248-355, - strand, RNAz p=0.863702

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.785402
               

               
               237-355, - strand, RNAz p=0.587999
               

               
               248-355, - strand, RNAz p=0.863702

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               253-354, - strand, RNAmicro p=0.999966
               

               
               71-204, - strand, RNAmicro p=0.913966

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               253-354, - strand, RNAmicro p=0.999966
               

               
               71-204, - strand, RNAmicro p=0.913966

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-355, gnl|bosTau2|chr28 (33146943-33147294)
               

               
               1-355, gnl|canFam2|chr28 (5501639-5501198)
               

               
               1-355, gnl|echTel1|scaffold_279187 (43557-43992)
               

               
               1-355, gnl|galGal2|chr6 (18297046-18297459)
               

               
               1-355, gnl|hg17|chr10 (44750158-44750598)
               

               
               1-355, gnl|Hg17|chr10 (44750211-44750565)
               

               
               1-355, gnl|loxAfr1|scaffold_83399 (2966-3404)
               

               
               1-355, gnl|mm7|chr6 (116721817-116721382)
               

               
               1-355, gnl|Mm7|chr6 (116721762-116721408)
               

               
               1-355, gnl|monDom2|scaffold_41 (8488879-8489298)
               

               
               1-355, gnl|oryCun1|scaffold_207789 (3297-3748)
               

               
               1-355, gnl|panTro1|chr8 (45500960-45501400)
               

               
               1-355, gnl|rheMac2|chr9 (45105929-45106378)
               

               
               1-355, gnl|rn3|chr4 (153284430-153283995)
               

               
               1-355, gnl|xenTro1|scaffold_831 (270626-271057)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-355, gnl|bosTau2|chr28 (33146943-33147294)
               

               
               1-355, gnl|canFam2|chr28 (5501639-5501198)
               

               
               1-355, gnl|echTel1|scaffold_279187 (43557-43992)
               

               
               1-355, gnl|galGal2|chr6 (18297046-18297459)
               

               
               1-355, gnl|hg17|chr10 (44750158-44750598)
               

               
               1-355, gnl|Hg17|chr10 (44750211-44750565)
               

               
               1-355, gnl|loxAfr1|scaffold_83399 (2966-3404)
               

               
               1-355, gnl|mm7|chr6 (116721817-116721382)
               

               
               1-355, gnl|Mm7|chr6 (116721762-116721408)
               

               
               1-355, gnl|monDom2|scaffold_41 (8488879-8489298)
               

               
               1-355, gnl|oryCun1|scaffold_207789 (3297-3748)
               

               
               1-355, gnl|panTro1|chr8 (45500960-45501400)
               

               
               1-355, gnl|rheMac2|chr9 (45105929-45106378)
               

               
               1-355, gnl|rn3|chr4 (153284430-153283995)
               

               
               1-355, gnl|xenTro1|scaffold_831 (270626-271057)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-199, - strand, RNAz p=0.785402
	237-355, - strand, RNAz p=0.587999
	248-355, - strand, RNAz p=0.863702

	253-354, - strand, RNAmicro p=0.999966
	71-204, - strand, RNAmicro p=0.913966

	1-355, gnl\|bosTau2\|chr28 (33146943-33147294)
	1-355, gnl\|canFam2\|chr28 (5501639-5501198)
	1-355, gnl\|echTel1\|scaffold_279187 (43557-43992)
	1-355, gnl\|galGal2\|chr6 (18297046-18297459)
	1-355, gnl\|hg17\|chr10 (44750158-44750598)
	1-355, gnl\|Hg17\|chr10 (44750211-44750565)
	1-355, gnl\|loxAfr1\|scaffold_83399 (2966-3404)
	1-355, gnl\|mm7\|chr6 (116721817-116721382)
	1-355, gnl\|Mm7\|chr6 (116721762-116721408)
	1-355, gnl\|monDom2\|scaffold_41 (8488879-8489298)
	1-355, gnl\|oryCun1\|scaffold_207789 (3297-3748)
	1-355, gnl\|panTro1\|chr8 (45500960-45501400)
	1-355, gnl\|rheMac2\|chr9 (45105929-45106378)
	1-355, gnl\|rn3\|chr4 (153284430-153283995)
	1-355, gnl\|xenTro1\|scaffold_831 (270626-271057)