rnco1905b_g20.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAATCAGGGGGCTTTATAAAACCCTGAAGTCTAAGTGTCCAGGGGGTCCATGCGGGCGG GGAGCAGCCACACGGGTTCTACAAACCGGACCAGGACCCTGGGTACAGGCCAAGTTTTCG CCGCACAAACTGGTTTGAGCCTGTGGGCTCAGAGTATAAACAGGTTATGCAAAAAGTAGG GGTGATTGACCTGTCACCGTTTGGCAAATTTAGCGTCAAAGGCCAAGACTCCGTTAGGTT GTTGGACCATCTCTTTGCCAATGTCATTCCCCAGGTGGGTTGTACAAATATAAGTCACAT GTTAACACCAAAAGGTCGAGTATATGCTGAGTTGACTGTTTCTCACCAGTCTCCTGGGGA GTTTCTATTAATAACCGGCTCTGGATCAGAACTTCATGATCTTAGATGGATTGAAGAAGA GGCAGTCACAGGTGGATACAACGTTGAAATTAAAAACATGACCGACGTGCTGGGAGTCCT TGGAGTCGCAGGACCACATGCAAGGAAGGTCCTTCAGAAACTGACCTCTGAAGATCTTAG TGATGGTGCTTTTAAGTTTCTTCAAACCAAGGCTTTCAAAGTGGCCAACATTCCCGTCAC TGCTATCAGGATATCTTACACTGGTGAGCTGGGTTGGGAGCTGTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAATCAGGGGGCTTTATAAAACCCTGAAGTCTAAGTGTCCAGGGGGTCCATGCGGGCGG GGAGCAGCCACACGGGTTCTACAAACCGGACCAGGACCCTGGGTACAGGCCAAGTTTTCG CCGCACAAACTGGTTTGAGCCTGTGGGCTCAGAGTATAAACAGGTTATGCAAAAAGTAGG GGTGATTGACCTGTCACCGTTTGGCAAATTTAGCGTCAAAGGCCAAGACTCCGTTAGGTT GTTGGACCATCTCTTTGCCAATGTCATTCCCCAGGTGGGTTGTACAAATATAAGTCACAT GTTAACACCAAAAGGTCGAGTATATGCTGAGTTGACTGTTTCTCACCAGTCTCCTGGGGA GTTTCTATTAATAACCGGCTCTGGATCAGAACTTCATGATCTTAGATGGATTGAAGAAGA GGCAGTCACAGGTGGATACAACGTTGAAATTAAAAACATGACCGACGTGCTGGGAGTCCT TGGAGTCGCAGGACCACATGCAAGGAAGGTCCTTCAGAAACTGACCTCTGAAGATCTTAG TGATGGTGCTTTTAAGTTTCTTCAAACCAAGGCTTTCAAAGTGGCCAACATTCCCGTCAC TGCTATCAGGATATCTTACACTGGTGAGCTGGGTTGGGAGCTGTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 106-224, + strand, RNAz p=0.656024 | |
| 442-561, - strand, RNAz p=0.726156 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 106-224, + strand, RNAz p=0.656024 | |
| 442-561, - strand, RNAz p=0.726156 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 106-276, gnl|bosTau2|chr10 (4137921-4137751) | |
| 106-276, gnl|canFam2|chr3 (30704255-30704071) | |
| 106-276, gnl|danRer3|chr19 (58927315-58927140) | |
| 106-276, gnl|dasNov1|scaffold_24393 (12355-12539) | |
| 106-276, gnl|echTel1|scaffold_318246 (44412-44228) | |
| 106-276, gnl|fr1|chrUn (58684004-58683829) | |
| 106-276, gnl|galGal2|chr13_random (961367-961551) | |
| 106-276, gnl|hg17|chr5 (78362399-78362583) | |
| 106-276, gnl|Hg17|chr5 (78362580-78362410) | |
| 106-276, gnl|loxAfr1|scaffold_1402 (97635-97451) | |
| 106-276, gnl|mm7|chr13 (90774456-90774278) | |
| 106-276, gnl|Mm7|chr13 (90774279-90774449) | |
| 106-276, gnl|monDom2|scaffold_27 (37056286-37056103) | |
| 106-276, gnl|panTro1|chr4 (36854064-36853880) | |
| 106-276, gnl|rheMac2|chr6 (75260087-75260271) | |
| 106-276, gnl|rn3|chr2 (23931265-23931087) | |
| 106-276, gnl|xenTro1|scaffold_183 (1543698-1543519) | |
| 403-628, gnl|bosTau2|chr10 (4135471-4135246) | |
| 403-628, gnl|canFam2|chr3 (30706376-30706117) | |
| 403-628, gnl|echTel1|scaffold_318246 (48259-48015) | |
| 403-628, gnl|fr1|chrUn (58684996-58684772) | |
| 403-628, gnl|galGal2|chr13_random (955980-956224) | |
| 403-628, gnl|hg17|chr5 (78359994-78360252) | |
| 403-628, gnl|Hg17|chr5 (78360232-78360007) | |
| 403-628, gnl|loxAfr1|scaffold_1402 (99582-99338) | |
| 403-628, gnl|mm7|chr13 (90778685-90778426) | |
| 403-628, gnl|Mm7|chr13 (90778444-90778669) | |
| 403-628, gnl|monDom2|scaffold_27 (37059386-37059125) | |
| 403-628, gnl|panTro1|chr4 (36856466-36856208) | |
| 403-628, gnl|rheMac2|chr6 (75256879-75257137) | |
| 403-628, gnl|rn3|chr2 (23934958-23934698) | |
| 403-628, gnl|xenTro1|scaffold_183 (1546708-1546462) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 106-276, gnl|bosTau2|chr10 (4137921-4137751) | |
| 106-276, gnl|canFam2|chr3 (30704255-30704071) | |
| 106-276, gnl|danRer3|chr19 (58927315-58927140) | |
| 106-276, gnl|dasNov1|scaffold_24393 (12355-12539) | |
| 106-276, gnl|echTel1|scaffold_318246 (44412-44228) | |
| 106-276, gnl|fr1|chrUn (58684004-58683829) | |
| 106-276, gnl|galGal2|chr13_random (961367-961551) | |
| 106-276, gnl|hg17|chr5 (78362399-78362583) | |
| 106-276, gnl|Hg17|chr5 (78362580-78362410) | |
| 106-276, gnl|loxAfr1|scaffold_1402 (97635-97451) | |
| 106-276, gnl|mm7|chr13 (90774456-90774278) | |
| 106-276, gnl|Mm7|chr13 (90774279-90774449) | |
| 106-276, gnl|monDom2|scaffold_27 (37056286-37056103) | |
| 106-276, gnl|panTro1|chr4 (36854064-36853880) | |
| 106-276, gnl|rheMac2|chr6 (75260087-75260271) | |
| 106-276, gnl|rn3|chr2 (23931265-23931087) | |
| 106-276, gnl|xenTro1|scaffold_183 (1543698-1543519) | |
| 403-628, gnl|bosTau2|chr10 (4135471-4135246) | |
| 403-628, gnl|canFam2|chr3 (30706376-30706117) | |
| 403-628, gnl|echTel1|scaffold_318246 (48259-48015) | |
| 403-628, gnl|fr1|chrUn (58684996-58684772) | |
| 403-628, gnl|galGal2|chr13_random (955980-956224) | |
| 403-628, gnl|hg17|chr5 (78359994-78360252) | |
| 403-628, gnl|Hg17|chr5 (78360232-78360007) | |
| 403-628, gnl|loxAfr1|scaffold_1402 (99582-99338) | |
| 403-628, gnl|mm7|chr13 (90778685-90778426) | |
| 403-628, gnl|Mm7|chr13 (90778444-90778669) | |
| 403-628, gnl|monDom2|scaffold_27 (37059386-37059125) | |
| 403-628, gnl|panTro1|chr4 (36856466-36856208) | |
| 403-628, gnl|rheMac2|chr6 (75256879-75257137) | |
| 403-628, gnl|rn3|chr2 (23934958-23934698) | |
| 403-628, gnl|xenTro1|scaffold_183 (1546708-1546462) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) |