Non-Coding RNA Search

rnco1905b_l12.y1

Sequence:


               
               GAGCATGGCATGGGTGCACAGGAACCTGGCTGCCCGAAATGTGCTACTGAAGTCCCCCAG
TCAGGTTCAGGTGGCAGATTTTGGGGTTGCTGACTTGCTGCCCCCTGATGATAAGCAGCT
ACTGCACAGTGAGGCCAAGACTCCAATTAAGTGGATGGCCCTAGAGAGTATCCACTTTGG
GAAATACACACACCAGAGTGACGTCTGGAGCTATGGAGTGACAGTTGGGGAGCTGATGAC
CTTTGGGGCAGAGCCCTATGCAGGGCTGCGACTGGCTGAAGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCATGGCATGGGTGCACAGGAACCTGGCTGCCCGAAATGTGCTACTGAAGTCCCCCAG
TCAGGTTCAGGTGGCAGATTTTGGGGTTGCTGACTTGCTGCCCCCTGATGATAAGCAGCT
ACTGCACAGTGAGGCCAAGACTCCAATTAAGTGGATGGCCCTAGAGAGTATCCACTTTGG
GAAATACACACACCAGAGTGACGTCTGGAGCTATGGAGTGACAGTTGGGGAGCTGATGAC
CTTTGGGGCAGAGCCCTATGCAGGGCTGCGACTGGCTGAAGTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61845732|ref|XP_600765.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61845732|ref|XP_600765.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-139, gnl|bosTau2|chr5 (33515422-33515285)
               

               
               1-139, gnl|canFam2|chr10 (3401714-3401875)
               

               
               1-139, gnl|danRer3|chr23 (42089104-42088945)
               

               
               1-139, gnl|dasNov1|scaffold_31683 (18488-18320)
               

               
               1-139, gnl|echTel1|scaffold_238911 (4415-4254)
               

               
               1-139, gnl|fr1|chrUn (41033770-41033929)
               

               
               1-139, gnl|hg17|chr12 (54777835-54777996)
               

               
               1-139, gnl|Hg17|chr12 (54777854-54777991)
               

               
               1-139, gnl|loxAfr1|scaffold_43517 (6235-6396)
               

               
               1-139, gnl|mm7|chr10 (128074360-128074199)
               

               
               1-139, gnl|Mm7|chr10 (128074339-128074202)
               

               
               1-139, gnl|monDom2|scaffold_234 (533550-533711)
               

               
               1-139, gnl|oryCun1|scaffold_213038 (93946-93785)
               

               
               1-139, gnl|panTro1|chr10 (56025835-56025996)
               

               
               1-139, gnl|rheMac2|chr11 (53154524-53154685)
               

               
               1-139, gnl|rn3|chr7 (1861050-1860889)
               

               
               1-139, gnl|tetNig1|chr9 (3960152-3960311)
               

               
               1-139, gnl|xenTro1|scaffold_85 (2062980-2063139)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-139, gnl|bosTau2|chr5 (33515422-33515285)
               

               
               1-139, gnl|canFam2|chr10 (3401714-3401875)
               

               
               1-139, gnl|danRer3|chr23 (42089104-42088945)
               

               
               1-139, gnl|dasNov1|scaffold_31683 (18488-18320)
               

               
               1-139, gnl|echTel1|scaffold_238911 (4415-4254)
               

               
               1-139, gnl|fr1|chrUn (41033770-41033929)
               

               
               1-139, gnl|hg17|chr12 (54777835-54777996)
               

               
               1-139, gnl|Hg17|chr12 (54777854-54777991)
               

               
               1-139, gnl|loxAfr1|scaffold_43517 (6235-6396)
               

               
               1-139, gnl|mm7|chr10 (128074360-128074199)
               

               
               1-139, gnl|Mm7|chr10 (128074339-128074202)
               

               
               1-139, gnl|monDom2|scaffold_234 (533550-533711)
               

               
               1-139, gnl|oryCun1|scaffold_213038 (93946-93785)
               

               
               1-139, gnl|panTro1|chr10 (56025835-56025996)
               

               
               1-139, gnl|rheMac2|chr11 (53154524-53154685)
               

               
               1-139, gnl|rn3|chr7 (1861050-1860889)
               

               
               1-139, gnl|tetNig1|chr9 (3960152-3960311)
               

               
               1-139, gnl|xenTro1|scaffold_85 (2062980-2063139)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-139, gnl\|bosTau2\|chr5 (33515422-33515285)
	1-139, gnl\|canFam2\|chr10 (3401714-3401875)
	1-139, gnl\|danRer3\|chr23 (42089104-42088945)
	1-139, gnl\|dasNov1\|scaffold_31683 (18488-18320)
	1-139, gnl\|echTel1\|scaffold_238911 (4415-4254)
	1-139, gnl\|fr1\|chrUn (41033770-41033929)
	1-139, gnl\|hg17\|chr12 (54777835-54777996)
	1-139, gnl\|Hg17\|chr12 (54777854-54777991)
	1-139, gnl\|loxAfr1\|scaffold_43517 (6235-6396)
	1-139, gnl\|mm7\|chr10 (128074360-128074199)
	1-139, gnl\|Mm7\|chr10 (128074339-128074202)
	1-139, gnl\|monDom2\|scaffold_234 (533550-533711)
	1-139, gnl\|oryCun1\|scaffold_213038 (93946-93785)
	1-139, gnl\|panTro1\|chr10 (56025835-56025996)
	1-139, gnl\|rheMac2\|chr11 (53154524-53154685)
	1-139, gnl\|rn3\|chr7 (1861050-1860889)
	1-139, gnl\|tetNig1\|chr9 (3960152-3960311)
	1-139, gnl\|xenTro1\|scaffold_85 (2062980-2063139)