Non-Coding RNA Search

rnco1913b_a19.y1

Sequence:


               
               CCCACCCACCGTCTCACCAAAGGGGCTGCTGACCAAGAGGCCCCACCCAGCCAGCTTTCT
GGTGCGCCGCCTCCTCTGGGCTGAGGTTCTCCAGCTCTTTGAGGATGGGTGGTGTGAAGT
CTTCCCCATCGTCGTCCGTCTCGTCCTCGGAGCCCCTCGTCTCCCCCAGCCCATTGGGCA
GCTCCGCAAGTTCTCCTCGTGCACCACCGCAGGACTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCCACCGTCTCACCAAAGGGGCTGCTGACCAAGAGGCCCCACCCAGCCAGCTTTCT
GGTGCGCCGCCTCCTCTGGGCTGAGGTTCTCCAGCTCTTTGAGGATGGGTGGTGTGAAGT
CTTCCCCATCGTCGTCCGTCTCGTCCTCGGAGCCCCTCGTCTCCCCCAGCCCATTGGGCA
GCTCCGCAAGTTCTCCTCGTGCACCACCGCAGGACTCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869458|ref|XP_604653.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869458|ref|XP_604653.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               54-219, gnl|bosTau2|chr17 (36121931-36122102)
               

               
               54-219, gnl|canFam2|chr26 (19831760-19832028)
               

               
               54-219, gnl|danRer3|chr15 (14644605-14644893)
               

               
               54-219, gnl|dasNov1|scaffold_261697 (1494-1220)
               

               
               54-219, gnl|echTel1|scaffold_317780 (42261-42540)
               

               
               54-219, gnl|fr1|chrUn (187306471-187306271)
               

               
               54-219, gnl|galGal2|chr15 (9050593-9050316)
               

               
               54-219, gnl|hg17|chr12 (119879285-119879553)
               

               
               54-219, gnl|Hg17|chr12 (119879596-119879431)
               

               
               54-219, gnl|loxAfr1|scaffold_21125 (22123-21855)
               

               
               54-219, gnl|mm7|chr5 (114191686-114191418)
               

               
               54-219, gnl|Mm7|chr5 (114191373-114191538)
               

               
               54-219, gnl|monDom2|scaffold_145 (1440174-1439908)
               

               
               54-219, gnl|panTro1|chr10 (122944442-122944710)
               

               
               54-219, gnl|rheMac2|chr11 (122017427-122017695)
               

               
               54-219, gnl|rn3|chr12 (42783105-42783373)
               

               
               54-219, gnl|tetNig1|chr16 (3867822-3868115)
               

               
               54-219, gnl|xenTro1|scaffold_9 (5079226-5079480)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-219, gnl|bosTau2|chr17 (36121931-36122102)
               

               
               54-219, gnl|canFam2|chr26 (19831760-19832028)
               

               
               54-219, gnl|danRer3|chr15 (14644605-14644893)
               

               
               54-219, gnl|dasNov1|scaffold_261697 (1494-1220)
               

               
               54-219, gnl|echTel1|scaffold_317780 (42261-42540)
               

               
               54-219, gnl|fr1|chrUn (187306471-187306271)
               

               
               54-219, gnl|galGal2|chr15 (9050593-9050316)
               

               
               54-219, gnl|hg17|chr12 (119879285-119879553)
               

               
               54-219, gnl|Hg17|chr12 (119879596-119879431)
               

               
               54-219, gnl|loxAfr1|scaffold_21125 (22123-21855)
               

               
               54-219, gnl|mm7|chr5 (114191686-114191418)
               

               
               54-219, gnl|Mm7|chr5 (114191373-114191538)
               

               
               54-219, gnl|monDom2|scaffold_145 (1440174-1439908)
               

               
               54-219, gnl|panTro1|chr10 (122944442-122944710)
               

               
               54-219, gnl|rheMac2|chr11 (122017427-122017695)
               

               
               54-219, gnl|rn3|chr12 (42783105-42783373)
               

               
               54-219, gnl|tetNig1|chr16 (3867822-3868115)
               

               
               54-219, gnl|xenTro1|scaffold_9 (5079226-5079480)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	54-219, gnl\|bosTau2\|chr17 (36121931-36122102)
	54-219, gnl\|canFam2\|chr26 (19831760-19832028)
	54-219, gnl\|danRer3\|chr15 (14644605-14644893)
	54-219, gnl\|dasNov1\|scaffold_261697 (1494-1220)
	54-219, gnl\|echTel1\|scaffold_317780 (42261-42540)
	54-219, gnl\|fr1\|chrUn (187306471-187306271)
	54-219, gnl\|galGal2\|chr15 (9050593-9050316)
	54-219, gnl\|hg17\|chr12 (119879285-119879553)
	54-219, gnl\|Hg17\|chr12 (119879596-119879431)
	54-219, gnl\|loxAfr1\|scaffold_21125 (22123-21855)
	54-219, gnl\|mm7\|chr5 (114191686-114191418)
	54-219, gnl\|Mm7\|chr5 (114191373-114191538)
	54-219, gnl\|monDom2\|scaffold_145 (1440174-1439908)
	54-219, gnl\|panTro1\|chr10 (122944442-122944710)
	54-219, gnl\|rheMac2\|chr11 (122017427-122017695)
	54-219, gnl\|rn3\|chr12 (42783105-42783373)
	54-219, gnl\|tetNig1\|chr16 (3867822-3868115)
	54-219, gnl\|xenTro1\|scaffold_9 (5079226-5079480)