rnco1915b_h18.y2
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTTTTTTTTTTTTTTTTTTTTTTTTCACAATTTAGAAACTGTTTATTTTACATCCAAC TCACTTCTATTTTTAGAAAATAAGAGTTCATGGAAGAACTTAAGACCACTCAGTGGTTGT TCCTACCCATTCAGTGGCCTGCGCAGTGGGAGCTGCAGACCAATCTTCAGTGGTAGGCTG AGCACTCCAATCTTCAGTAGGGAATTGCTGGATGGGCACAGAAGGCACCTGCACACCTTC GGACCAATCTGCCACCTCAGGTTGAGTGGCAGTGAACTCAGGAGCTGGCGCAGTCCATTC ACCCTGAAATTCCTCCTTGGTTACAGCCTTCTCAGCTGCGGCCTGCTCTTCCTTTTCAAT CTCTTCAGGATCTCTGTAGAAGTAGAGGTCAGGCATGACTTCCCATGGGTGTTCCCGGGA GATGGTGCCACGCATGCGCAGAACTTCCCGGGCGAGCATCCACCACATCAGACCCACTGA GTGAGCTCCCTTGTTGTTGCACGGGATGGCAATGTCCACATAACGCAGAGGTGAGTCTGT GTTACACAGAGCAATGGTAGGCAGGTTAACATAAGAGGCCTCTGTGAGAGGCTGGTGGTC AGCCCTGGGATCAGTAACCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTTTTTTTTTTTTTTTTTTTTTTTTCACAATTTAGAAACTGTTTATTTTACATCCAAC TCACTTCTATTTTTAGAAAATAAGAGTTCATGGAAGAACTTAAGACCACTCAGTGGTTGT TCCTACCCATTCAGTGGCCTGCGCAGTGGGAGCTGCAGACCAATCTTCAGTGGTAGGCTG AGCACTCCAATCTTCAGTAGGGAATTGCTGGATGGGCACAGAAGGCACCTGCACACCTTC GGACCAATCTGCCACCTCAGGTTGAGTGGCAGTGAACTCAGGAGCTGGCGCAGTCCATTC ACCCTGAAATTCCTCCTTGGTTACAGCCTTCTCAGCTGCGGCCTGCTCTTCCTTTTCAAT CTCTTCAGGATCTCTGTAGAAGTAGAGGTCAGGCATGACTTCCCATGGGTGTTCCCGGGA GATGGTGCCACGCATGCGCAGAACTTCCCGGGCGAGCATCCACCACATCAGACCCACTGA GTGAGCTCCCTTGTTGTTGCACGGGATGGCAATGTCCACATAACGCAGAGGTGAGTCTGT GTTACACAGAGCAATGGTAGGCAGGTTAACATAAGAGGCCTCTGTGAGAGGCTGGTGGTC AGCCCTGGGATCAGTAACCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 38-269, - strand, RNAz p=0.995325 | |
| 310-429, - strand, RNAz p=0.829209 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 38-269, - strand, RNAz p=0.995325 | |
| 310-429, - strand, RNAz p=0.829209 |
| Aligned organism(s): 9 entry(ies) | More info |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
| 38-621, gnl|bosTau2|chr1 (70203403-70202833) | |
| 38-621, gnl|Hg17|chr13 (20434401-20433817) | |
| 38-621, gnl|Mm7|chr11 (32990773-32991347) | |
| 42-583, gnl|bosTau2|chr16 (7130652-7130098) | |
| 42-583, gnl|Hg17|chr3 (32208176-32207626) | |
| 42-583, gnl|Mm7|chr17 (80708918-80709480) | |
| 130-351, gnl|bosTau2|chr10 (44457283-44457490) | |
| 130-351, gnl|Hg17|chr9 (76244026-76243805) | |
| 130-351, gnl|Mm7|chr3 (149972874-149973110) |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 38-621, gnl|bosTau2|chr1 (70203403-70202833) | |
| 38-621, gnl|Hg17|chr13 (20434401-20433817) | |
| 38-621, gnl|Mm7|chr11 (32990773-32991347) | |
| 42-583, gnl|bosTau2|chr16 (7130652-7130098) | |
| 42-583, gnl|Hg17|chr3 (32208176-32207626) | |
| 42-583, gnl|Mm7|chr17 (80708918-80709480) | |
| 130-351, gnl|bosTau2|chr10 (44457283-44457490) | |
| 130-351, gnl|Hg17|chr9 (76244026-76243805) | |
| 130-351, gnl|Mm7|chr3 (149972874-149973110) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) |