Non-Coding RNA Search

rnco1915b_n6.y2

Sequence:


               
               CCATCTTCTGCTACTCGCGCTTTGTGTGGATCATGCTCGCCCAGCCCCACGTGGGGGCCC
AGAGGCGGCGCCGAGCCGTGGGGCTGGCTGTGGTGACACTCCTTAACTTCCTGGTGTGCT
TCGGGCCCTATAACATATCCCACCTGGTGGGCTTCCACACGAAGGAGAGCCCCAAATGGC
GTGCGGAGGCTGTGGTATTCAGCTCCCTCAACGCCAGTCTGGACCCCCTGCTTTTCTATT
TCTCGTCTTCAGTGGTGCGCAGGACCTTTGGCAAAGGGCTGCAGGCGCTGCGGAATCAGG
GCTCCTTGCTGCTGGGCCGCAGAGGCAAAGAGACCGAGGAGGCGGCGAACGGGGACAGGG
GTGTGAGTCAAACCGAGGGAGCGCCGAGTTCTGACTTCACCACCGACTAGGGGTGTCCCT
GGACCTTCGGGGGCACTCAGGGTGGTGTCTGGGTGGAGCAGGCTGGGCATCAGAGAGCAG
GAGGGTTCCTGTCCCCGGCTCAGGAATCCTCAGACCCAGTCCCCCACTGGGATTGTAAAA
ACCCATCTCGCTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCTTCTGCTACTCGCGCTTTGTGTGGATCATGCTCGCCCAGCCCCACGTGGGGGCCC
AGAGGCGGCGCCGAGCCGTGGGGCTGGCTGTGGTGACACTCCTTAACTTCCTGGTGTGCT
TCGGGCCCTATAACATATCCCACCTGGTGGGCTTCCACACGAAGGAGAGCCCCAAATGGC
GTGCGGAGGCTGTGGTATTCAGCTCCCTCAACGCCAGTCTGGACCCCCTGCTTTTCTATT
TCTCGTCTTCAGTGGTGCGCAGGACCTTTGGCAAAGGGCTGCAGGCGCTGCGGAATCAGG
GCTCCTTGCTGCTGGGCCGCAGAGGCAAAGAGACCGAGGAGGCGGCGAACGGGGACAGGG
GTGTGAGTCAAACCGAGGGAGCGCCGAGTTCTGACTTCACCACCGACTAGGGGTGTCCCT
GGACCTTCGGGGGCACTCAGGGTGGTGTCTGGGTGGAGCAGGCTGGGCATCAGAGAGCAG
GAGGGTTCCTGTCCCCGGCTCAGGAATCCTCAGACCCAGTCCCCCACTGGGATTGTAAAA
ACCCATCTCGCTCACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, - strand, RNAz p=0.873857

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.873857

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-549, gnl|bosTau2|chr18 (39651979-39651423)
               

               
               1-549, gnl|Hg17|chr19 (40633040-40633590)
               

               
               1-549, gnl|Mm7|chr7 (27758964-27758369)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-549, gnl|bosTau2|chr18 (39651979-39651423)
               

               
               1-549, gnl|Hg17|chr19 (40633040-40633590)
               

               
               1-549, gnl|Mm7|chr7 (27758964-27758369)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-549, gnl\|bosTau2\|chr18 (39651979-39651423)
	1-549, gnl\|Hg17\|chr19 (40633040-40633590)
	1-549, gnl\|Mm7\|chr7 (27758964-27758369)