Non-Coding RNA Search

rnco1916b_d6.y1

Sequence:


               
               CTCTAAAGTCCCATCCAGATTTGATGCTCTGGGGTTCTGTGATCAGCGTGAAGACTGTGA
ACATCAGTGGAAGGAAGCAGGTAAATGGAAGAGCTGGAGACCAGTTTATTTCAGACACGG
AAAGCACACAGAATAGAGCAAATGGTGGCACGATGGCTCCGGCGTTCCCGGGACAGCTCG
GCCCGGGCTAAAGTTGCTGCAGCTGATGGACCCCCTGGGATCCCAACCCAGACCCTCATC
CCTGTGAAACACACTATAAAGCTAGACAAAGACGCCCTCCTCCAGGACTACGGATTTCAC
ATTTCTGAGAGCCTTCCCCTCACAGTGGTGGCTGTCACAGCAGGAGGTGCTGCTCACGGC
AAGCTTTTCCCTGGGGATCAGATCCTCCAAATGAACAATGAGCCCGCCGAAGACCTTTCC
TGTGAACGAGCAGTCAATATTCTGAGGGAAGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAAAGTCCCATCCAGATTTGATGCTCTGGGGTTCTGTGATCAGCGTGAAGACTGTGA
ACATCAGTGGAAGGAAGCAGGTAAATGGAAGAGCTGGAGACCAGTTTATTTCAGACACGG
AAAGCACACAGAATAGAGCAAATGGTGGCACGATGGCTCCGGCGTTCCCGGGACAGCTCG
GCCCGGGCTAAAGTTGCTGCAGCTGATGGACCCCCTGGGATCCCAACCCAGACCCTCATC
CCTGTGAAACACACTATAAAGCTAGACAAAGACGCCCTCCTCCAGGACTACGGATTTCAC
ATTTCTGAGAGCCTTCCCCTCACAGTGGTGGCTGTCACAGCAGGAGGTGCTGCTCACGGC
AAGCTTTTCCCTGGGGATCAGATCCTCCAAATGAACAATGAGCCCGCCGAAGACCTTTCC
TGTGAACGAGCAGTCAATATTCTGAGGGAAGCTGA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               177-352, gnl|bosTau2|chr8 (31806144-31806320)
               

               
               177-352, gnl|canFam2|chr11 (57046601-57047356)
               

               
               177-352, gnl|dasNov1|scaffold_4342 (4731-5533)
               

               
               177-352, gnl|echTel1|scaffold_291717 (62192-61480)
               

               
               177-352, gnl|hg17|chr9 (37697272-37698004)
               

               
               177-352, gnl|Hg17|chr9 (37697404-37697580)
               

               
               177-352, gnl|loxAfr1|scaffold_1530 (69935-69212)
               

               
               177-352, gnl|mm7|chr4 (45257331-45258059)
               

               
               177-352, gnl|Mm7|chr4 (45257435-45257611)
               

               
               177-352, gnl|oryCun1|scaffold_199241 (33475-34182)
               

               
               177-352, gnl|panTro1|chr11 (38431416-38432148)
               

               
               177-352, gnl|rheMac2|chr15 (39708866-39708135)
               

               
               177-352, gnl|rn3|chr5 (61809491-61810204)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-352, gnl|bosTau2|chr8 (31806144-31806320)
               

               
               177-352, gnl|canFam2|chr11 (57046601-57047356)
               

               
               177-352, gnl|dasNov1|scaffold_4342 (4731-5533)
               

               
               177-352, gnl|echTel1|scaffold_291717 (62192-61480)
               

               
               177-352, gnl|hg17|chr9 (37697272-37698004)
               

               
               177-352, gnl|Hg17|chr9 (37697404-37697580)
               

               
               177-352, gnl|loxAfr1|scaffold_1530 (69935-69212)
               

               
               177-352, gnl|mm7|chr4 (45257331-45258059)
               

               
               177-352, gnl|Mm7|chr4 (45257435-45257611)
               

               
               177-352, gnl|oryCun1|scaffold_199241 (33475-34182)
               

               
               177-352, gnl|panTro1|chr11 (38431416-38432148)
               

               
               177-352, gnl|rheMac2|chr15 (39708866-39708135)
               

               
               177-352, gnl|rn3|chr5 (61809491-61810204)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	177-352, gnl\|bosTau2\|chr8 (31806144-31806320)
	177-352, gnl\|canFam2\|chr11 (57046601-57047356)
	177-352, gnl\|dasNov1\|scaffold_4342 (4731-5533)
	177-352, gnl\|echTel1\|scaffold_291717 (62192-61480)
	177-352, gnl\|hg17\|chr9 (37697272-37698004)
	177-352, gnl\|Hg17\|chr9 (37697404-37697580)
	177-352, gnl\|loxAfr1\|scaffold_1530 (69935-69212)
	177-352, gnl\|mm7\|chr4 (45257331-45258059)
	177-352, gnl\|Mm7\|chr4 (45257435-45257611)
	177-352, gnl\|oryCun1\|scaffold_199241 (33475-34182)
	177-352, gnl\|panTro1\|chr11 (38431416-38432148)
	177-352, gnl\|rheMac2\|chr15 (39708866-39708135)
	177-352, gnl\|rn3\|chr5 (61809491-61810204)