Non-Coding RNA Search

rnco1917b_n2.y1

Sequence:


               
               ACTACACGGCTTCCCCGCCAGTCAGATGCTACAGAACACACACTGATTTGCTTTCCAAAC
CCTAATCAGTCTTTCTATACACAAAGATTAAAAAAAAAAACAACTATATATATATATATA
TATATTCATATTTTTTTTTTATTTGCGCCTTCCTTGCGCGACCACTGCTCCTCCAGCCTG
CGCGCCTTCTAACACCACTTTTCACTCCCAAAGAAAGATGAAAGGTGGCTGTGTCTCCCA
GTGGAAGGCGGCCGCCGGGCTCCTCTTCTGTGTCACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTACACGGCTTCCCCGCCAGTCAGATGCTACAGAACACACACTGATTTGCTTTCCAAAC
CCTAATCAGTCTTTCTATACACAAAGATTAAAAAAAAAAACAACTATATATATATATATA
TATATTCATATTTTTTTTTTATTTGCGCCTTCCTTGCGCGACCACTGCTCCTCCAGCCTG
CGCGCCTTCTAACACCACTTTTCACTCCCAAAGAAAGATGAAAGGTGGCTGTGTCTCCCA
GTGGAAGGCGGCCGCCGGGCTCCTCTTCTGTGTCACGG

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-278, gnl|bosTau2|chr13 (23188032-23188315)
               

               
               1-278, gnl|canFam2|chr24 (8764559-8764175)
               

               
               1-278, gnl|dasNov1|scaffold_11811 (28478-28106)
               

               
               1-278, gnl|echTel1|scaffold_294962 (34064-33721)
               

               
               1-278, gnl|hg17|chr20 (17155588-17155956)
               

               
               1-278, gnl|Hg17|chr20 (17155750-17156011)
               

               
               1-278, gnl|mm7|chr2 (143286955-143287353)
               

               
               1-278, gnl|Mm7|chr2 (143287116-143287405)
               

               
               1-278, gnl|monDom2|scaffold_1 (51596949-51597346)
               

               
               1-278, gnl|oryCun1|scaffold_206264 (73528-73153)
               

               
               1-278, gnl|panTro1|chr21 (17005775-17006144)
               

               
               1-278, gnl|rheMac2|chr10 (50555942-50556317)
               

               
               1-278, gnl|rn3|chr3 (131831163-131831548)
               

               
               1-278, gnl|xenTro1|scaffold_112 (1679872-1679562)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chr13 (23188032-23188315)
               

               
               1-278, gnl|canFam2|chr24 (8764559-8764175)
               

               
               1-278, gnl|dasNov1|scaffold_11811 (28478-28106)
               

               
               1-278, gnl|echTel1|scaffold_294962 (34064-33721)
               

               
               1-278, gnl|hg17|chr20 (17155588-17155956)
               

               
               1-278, gnl|Hg17|chr20 (17155750-17156011)
               

               
               1-278, gnl|mm7|chr2 (143286955-143287353)
               

               
               1-278, gnl|Mm7|chr2 (143287116-143287405)
               

               
               1-278, gnl|monDom2|scaffold_1 (51596949-51597346)
               

               
               1-278, gnl|oryCun1|scaffold_206264 (73528-73153)
               

               
               1-278, gnl|panTro1|chr21 (17005775-17006144)
               

               
               1-278, gnl|rheMac2|chr10 (50555942-50556317)
               

               
               1-278, gnl|rn3|chr3 (131831163-131831548)
               

               
               1-278, gnl|xenTro1|scaffold_112 (1679872-1679562)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-278, gnl\|bosTau2\|chr13 (23188032-23188315)
	1-278, gnl\|canFam2\|chr24 (8764559-8764175)
	1-278, gnl\|dasNov1\|scaffold_11811 (28478-28106)
	1-278, gnl\|echTel1\|scaffold_294962 (34064-33721)
	1-278, gnl\|hg17\|chr20 (17155588-17155956)
	1-278, gnl\|Hg17\|chr20 (17155750-17156011)
	1-278, gnl\|mm7\|chr2 (143286955-143287353)
	1-278, gnl\|Mm7\|chr2 (143287116-143287405)
	1-278, gnl\|monDom2\|scaffold_1 (51596949-51597346)
	1-278, gnl\|oryCun1\|scaffold_206264 (73528-73153)
	1-278, gnl\|panTro1\|chr21 (17005775-17006144)
	1-278, gnl\|rheMac2\|chr10 (50555942-50556317)
	1-278, gnl\|rn3\|chr3 (131831163-131831548)
	1-278, gnl\|xenTro1\|scaffold_112 (1679872-1679562)