Non-Coding RNA Search

rnco1923b_j7.y1

Sequence:


               
               GCGAAGCCCGGCCATGTCCTGCTACATCTACCAGCTGCCCTCCTGGGTGCTGGACGACCT
GTGCCGCAACATGGACACGCTGAGCGAGTGGGACTGGATGCAGTTCGCTTCCTATGTGAT
CACAGACCTGACCCAGCTACGGAAGATCAAGTCGATGGAGCGGGCGCAGGGCGTGAGCAT
CACTCGGGAGCTGCTGTGGTGGTGGGGCATGCGGCAGGCCACCGTCCAGCAACTGCTGGA
CCTCCTGTGCCACCTGGAGCTCTACCGTGCTGCCCAGATCATCCTGAACTGGAAACCTGT
TCCTGAAATCAAATCTTTCATCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAAGCCCGGCCATGTCCTGCTACATCTACCAGCTGCCCTCCTGGGTGCTGGACGACCT
GTGCCGCAACATGGACACGCTGAGCGAGTGGGACTGGATGCAGTTCGCTTCCTATGTGAT
CACAGACCTGACCCAGCTACGGAAGATCAAGTCGATGGAGCGGGCGCAGGGCGTGAGCAT
CACTCGGGAGCTGCTGTGGTGGTGGGGCATGCGGCAGGCCACCGTCCAGCAACTGCTGGA
CCTCCTGTGCCACCTGGAGCTCTACCGTGCTGCCCAGATCATCCTGAACTGGAAACCTGT
TCCTGAAATCAAATCTTTCATCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26329399|dbj|BAC28438.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26329399|dbj|BAC28438.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               107-291, gnl|bosTau2|chr22 (12164861-12165045)
               

               
               107-291, gnl|canFam2|chr20 (11190931-11190684)
               

               
               107-291, gnl|galGal2|chr12 (19351775-19352022)
               

               
               107-291, gnl|hg17|chr3 (10194457-10194716)
               

               
               107-291, gnl|Hg17|chr3 (10194521-10194705)
               

               
               107-291, gnl|mm7|chr6 (113808507-113808762)
               

               
               107-291, gnl|Mm7|chr6 (113808568-113808752)
               

               
               107-291, gnl|monDom2|scaffold_5 (36904616-36904847)
               

               
               107-291, gnl|oryCun1|scaffold_200732 (35140-34882)
               

               
               107-291, gnl|panTro1|chr2 (10587346-10587705)
               

               
               107-291, gnl|rheMac2|chr2 (50862357-50862098)
               

               
               107-291, gnl|rn3|chr4 (149795870-149796117)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-291, gnl|bosTau2|chr22 (12164861-12165045)
               

               
               107-291, gnl|canFam2|chr20 (11190931-11190684)
               

               
               107-291, gnl|galGal2|chr12 (19351775-19352022)
               

               
               107-291, gnl|hg17|chr3 (10194457-10194716)
               

               
               107-291, gnl|Hg17|chr3 (10194521-10194705)
               

               
               107-291, gnl|mm7|chr6 (113808507-113808762)
               

               
               107-291, gnl|Mm7|chr6 (113808568-113808752)
               

               
               107-291, gnl|monDom2|scaffold_5 (36904616-36904847)
               

               
               107-291, gnl|oryCun1|scaffold_200732 (35140-34882)
               

               
               107-291, gnl|panTro1|chr2 (10587346-10587705)
               

               
               107-291, gnl|rheMac2|chr2 (50862357-50862098)
               

               
               107-291, gnl|rn3|chr4 (149795870-149796117)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	107-291, gnl\|bosTau2\|chr22 (12164861-12165045)
	107-291, gnl\|canFam2\|chr20 (11190931-11190684)
	107-291, gnl\|galGal2\|chr12 (19351775-19352022)
	107-291, gnl\|hg17\|chr3 (10194457-10194716)
	107-291, gnl\|Hg17\|chr3 (10194521-10194705)
	107-291, gnl\|mm7\|chr6 (113808507-113808762)
	107-291, gnl\|Mm7\|chr6 (113808568-113808752)
	107-291, gnl\|monDom2\|scaffold_5 (36904616-36904847)
	107-291, gnl\|oryCun1\|scaffold_200732 (35140-34882)
	107-291, gnl\|panTro1\|chr2 (10587346-10587705)
	107-291, gnl\|rheMac2\|chr2 (50862357-50862098)
	107-291, gnl\|rn3\|chr4 (149795870-149796117)