rnco1931b_m24.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGAGCTGGCTGGTCCCGGGGCTGTGGCTGCTGGCTCTCAGCGGTCCTGGGGCGCTGGT GAGCGCCCAGGAGCAGCCGTCCTGCAGTGGAGCTTTTGATCTCTACTTCGTCCTGGACAA GTCTGGGAGTGTGGCCAATAACTGGATTGAAATTTACAATTTTGTCCATCAACTTACAGA GAGATTTGTGAGCCCTCAAGAGGAGATTATCTTTCATTGTGTTTTCTTCTCAAGCAACCA TTATTTTGCCATTAACTGGAGACAGAGGCAAAATCAGTGAAGGCTTGGACAATCTAAAGC GGGTCAGTCCCGTGGGAGAGACGTACATCCATGAAGGCCTAAAGCTAGCAAATGAACAAA TTGAGAAAGCAGGAGGTTTGAAAACCTCCAGTATCATAATTGCTCTGACAGACGGTAAGT TGGACGGTCTGGTGCCATCGTACGCAGAGAAGGAGGCAAAGATATCCAGGTCACTGGGGG CCAGAGTTTATTGTGTTGGTGTCCTTGACTTCGAACAAGCTCAGCTCGAAAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGAGCTGGCTGGTCCCGGGGCTGTGGCTGCTGGCTCTCAGCGGTCCTGGGGCGCTGGT GAGCGCCCAGGAGCAGCCGTCCTGCAGTGGAGCTTTTGATCTCTACTTCGTCCTGGACAA GTCTGGGAGTGTGGCCAATAACTGGATTGAAATTTACAATTTTGTCCATCAACTTACAGA GAGATTTGTGAGCCCTCAAGAGGAGATTATCTTTCATTGTGTTTTCTTCTCAAGCAACCA TTATTTTGCCATTAACTGGAGACAGAGGCAAAATCAGTGAAGGCTTGGACAATCTAAAGC GGGTCAGTCCCGTGGGAGAGACGTACATCCATGAAGGCCTAAAGCTAGCAAATGAACAAA TTGAGAAAGCAGGAGGTTTGAAAACCTCCAGTATCATAATTGCTCTGACAGACGGTAAGT TGGACGGTCTGGTGCCATCGTACGCAGAGAAGGAGGCAAAGATATCCAGGTCACTGGGGG CCAGAGTTTATTGTGTTGGTGTCCTTGACTTCGAACAAGCTCAGCTCGAAAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 1-122, + strand, RNAz p=0.67032 | |
| 348-456, + strand, RNAz p=0.700891 | |
| 348-456, - strand, RNAz p=0.700891 | |
| 348-456, + strand, RNAz p=0.633204 | |
| 348-456, - strand, RNAz p=0.633204 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-122, + strand, RNAz p=0.67032 | |
| 348-456, + strand, RNAz p=0.700891 | |
| 348-456, - strand, RNAz p=0.700891 | |
| 348-456, + strand, RNAz p=0.633204 | |
| 348-456, - strand, RNAz p=0.633204 |
| Aligned organism(s): 20 entry(ies) | More info |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr6 (52721437-52721316) | |
| 1-122, gnl|Hg17|chr4 (81350861-81350740) | |
| 1-122, gnl|Mm7|chr5 (97245400-97245279) | |
| 348-456, gnl|bosTau2|chr6 (52660012-52659904) | |
| 348-456, gnl|canFam2|chr32 (7248476-7248582) | |
| 348-456, gnl|danRer3|chr5 (35000258-35000361) | |
| 348-456, gnl|dasNov1|scaffold_18092 (62271-62165) | |
| 348-456, gnl|echTel1|scaffold_219141 (14302-14197) | |
| 348-456, gnl|galGal2|chr4 (45878078-45878183) | |
| 348-456, gnl|hg17|chr4 (81333675-81333781) | |
| 348-456, gnl|Hg17|chr4 (81333800-81333692) | |
| 348-456, gnl|loxAfr1|scaffold_2255 (42718-42612) | |
| 348-456, gnl|mm7|chr5 (97219807-97219913) | |
| 348-456, gnl|Mm7|chr5 (97219932-97219824) | |
| 348-456, gnl|monDom2|scaffold_37 (20476636-20476530) | |
| 348-456, gnl|oryCun1|scaffold_203782 (45979-45873) | |
| 348-456, gnl|panTro1|chr3 (52396154-52396048) | |
| 348-456, gnl|rheMac2|chr5 (49535869-49535792) | |
| 348-456, gnl|rn3|chr4 (121678186-121678277) | |
| 348-456, gnl|tetNig1|chr12 (9759732-9759641) |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr6 (52721437-52721316) | |
| 1-122, gnl|Hg17|chr4 (81350861-81350740) | |
| 1-122, gnl|Mm7|chr5 (97245400-97245279) | |
| 348-456, gnl|bosTau2|chr6 (52660012-52659904) | |
| 348-456, gnl|canFam2|chr32 (7248476-7248582) | |
| 348-456, gnl|danRer3|chr5 (35000258-35000361) | |
| 348-456, gnl|dasNov1|scaffold_18092 (62271-62165) | |
| 348-456, gnl|echTel1|scaffold_219141 (14302-14197) | |
| 348-456, gnl|galGal2|chr4 (45878078-45878183) | |
| 348-456, gnl|hg17|chr4 (81333675-81333781) | |
| 348-456, gnl|Hg17|chr4 (81333800-81333692) | |
| 348-456, gnl|loxAfr1|scaffold_2255 (42718-42612) | |
| 348-456, gnl|mm7|chr5 (97219807-97219913) | |
| 348-456, gnl|Mm7|chr5 (97219932-97219824) | |
| 348-456, gnl|monDom2|scaffold_37 (20476636-20476530) | |
| 348-456, gnl|oryCun1|scaffold_203782 (45979-45873) | |
| 348-456, gnl|panTro1|chr3 (52396154-52396048) | |
| 348-456, gnl|rheMac2|chr5 (49535869-49535792) | |
| 348-456, gnl|rn3|chr4 (121678186-121678277) | |
| 348-456, gnl|tetNig1|chr12 (9759732-9759641) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) |