Non-Coding RNA Search

rnco1932b_j3.y1

Sequence:


               
               GCCCTAAAAAGACAAAATAGGAGtcccattgtggctcagcagaaatgaatccaactagga
gccatgaggttgcgggttcagtccctggcctcgcttggtgggttaaagatccagcattgc
tgtggatgtggctcagatctggcaatgctgtgactctggcataggctggcagcaacaact
gcgattagacccctagcctgagaatctccgtatgccgtgggtacgaccctcaaaagacaa
aaatataaaaaTCAAGACAACTCGATTTTCCCAAGGTCAGAACTGGAGATAGAATCCAGA
CCAGCAGAAATAGGGGTTCTGAGAATGCCAGCCTGGGGCCCCCTTGCACGTCCACCTGGA
TGGAGCACAGTGGAAAAGGTTTGGGTTGTCCCACCCCATCGAAGGTCCCTAAGAGAGAAC
TGGTTTTCTTGGCCTGCAGCCCGGTGGTGCCTCTTCTAACTACTAGTCCTGGCCTGTAGC
CAAGAGCTGTCCCCAGCCTGATGCTTCTGACAGGTGGTTTTAGCTCTTTACCAGCCCCAG
CCCAGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTAAAAAGACAAAATAGGAGtcccattgtggctcagcagaaatgaatccaactagga
gccatgaggttgcgggttcagtccctggcctcgcttggtgggttaaagatccagcattgc
tgtggatgtggctcagatctggcaatgctgtgactctggcataggctggcagcaacaact
gcgattagacccctagcctgagaatctccgtatgccgtgggtacgaccctcaaaagacaa
aaatataaaaaTCAAGACAACTCGATTTTCCCAAGGTCAGAACTGGAGATAGAATCCAGA
CCAGCAGAAATAGGGGTTCTGAGAATGCCAGCCTGGGGCCCCCTTGCACGTCCACCTGGA
TGGAGCACAGTGGAAAAGGTTTGGGTTGTCCCACCCCATCGAAGGTCCCTAAGAGAGAAC
TGGTTTTCTTGGCCTGCAGCCCGGTGGTGCCTCTTCTAACTACTAGTCCTGGCCTGTAGC
CAAGAGCTGTCCCCAGCCTGATGCTTCTGACAGGTGGTTTTAGCTCTTTACCAGCCCCAG
CCCAGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               425-548, - strand, RNAz p=0.95795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-548, - strand, RNAz p=0.95795

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               244-548, gnl|bosTau2|chr10 (23804866-23805176)
               

               
               244-548, gnl|Hg17|chr15 (38500210-38500529)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               244-548, gnl|bosTau2|chr10 (23804866-23805176)
               

               
               244-548, gnl|Hg17|chr15 (38500210-38500529)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	244-548, gnl\|bosTau2\|chr10 (23804866-23805176)
	244-548, gnl\|Hg17\|chr15 (38500210-38500529)