Non-Coding RNA Search

rnco1935b_c10.y1

Sequence:


               
               CCCGCGGAGCCCGGGACAATCCCGAGCCTTTGTGCGCTGTTGCTAGGAGCCCGAGAAACT
AAGAGAAAGTGTCAGGAGCATGTTAATCAGACTCGTTACAGTGTAACAATAACGTCTCTC
TCGGGTCTCCCAGGCCCTGGCGCACCCCCGTGCGCACCCCGCACACAGGCCGGACACCTG
CGCGGGGGCCCTCGCGCCCGCCCTGGAGACCGGCGGGCCCCTGTGTCCCTCCAGCCCCGA
AGTCGAAGTTGGCGCCGCAGCCAGGCGCCTGGACAAGCCCTGGGGGCCCTGCAAACGCCA
GGGGCATCTCCCAGGCCTTGGTCTCCCAGACCTGAGCCCCGCGCCCTTAGCCTGTCCAGC
TGGGAGCTGATCCCTGACCGGGGCACCTGTGGCGGATCCGGATCCCCTTGCTTTTCAGTC
ACTGAGTGGAATTGCCCACGCTATTCAGGCACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCGGAGCCCGGGACAATCCCGAGCCTTTGTGCGCTGTTGCTAGGAGCCCGAGAAACT
AAGAGAAAGTGTCAGGAGCATGTTAATCAGACTCGTTACAGTGTAACAATAACGTCTCTC
TCGGGTCTCCCAGGCCCTGGCGCACCCCCGTGCGCACCCCGCACACAGGCCGGACACCTG
CGCGGGGGCCCTCGCGCCCGCCCTGGAGACCGGCGGGCCCCTGTGTCCCTCCAGCCCCGA
AGTCGAAGTTGGCGCCGCAGCCAGGCGCCTGGACAAGCCCTGGGGGCCCTGCAAACGCCA
GGGGCATCTCCCAGGCCTTGGTCTCCCAGACCTGAGCCCCGCGCCCTTAGCCTGTCCAGC
TGGGAGCTGATCCCTGACCGGGGCACCTGTGGCGGATCCGGATCCCCTTGCTTTTCAGTC
ACTGAGTGGAATTGCCCACGCTATTCAGGCACTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-199, - strand, RNAz p=0.979286

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, - strand, RNAz p=0.979286

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-375, gnl|bosTau2|chr12 (40399489-40399849)
               

               
               1-375, gnl|Hg17|chr13 (99346503-99346878)
               

               
               1-375, gnl|Mm7|chr14 (116811532-116811849)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-375, gnl|bosTau2|chr12 (40399489-40399849)
               

               
               1-375, gnl|Hg17|chr13 (99346503-99346878)
               

               
               1-375, gnl|Mm7|chr14 (116811532-116811849)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-375, gnl\|bosTau2\|chr12 (40399489-40399849)
	1-375, gnl\|Hg17\|chr13 (99346503-99346878)
	1-375, gnl\|Mm7\|chr14 (116811532-116811849)