Non-Coding RNA Search

rnco1935b_d5.y2

Sequence:


               
               GGCTGCTCTATGTCGTCATAAACAGTATATGGGCAATCGCTTTATTCAAGTTCATCCAAT
TACTAAGAAAGGTATGCTAGAAAAGATAGATATGATTCGAAAAAGACTGCAGAACTTCAG
CTATGACCAGAGGGAAATGATGTTAAATCCAGAGGGGGATGTCAACTCTGCCAAAGTCTG
TGCCCATATAACAAATATTCCCTTCAGCGTTACCAAGATGGATGTTCTTCAGTTCCTAGA
AGGAATCCCAGTGGATGAAAATGCTGTACATGTTCTTGTTGATAACAATGGGCAAGGTCT
AGGACAGGCATTGGTTCAGTTTAAAAATGAAGATGACGCACGTAAGTCTGAACGCTTACA
CCGTAAAAAACTTAATGGGAGAGAAGCTTTTGTTCACGTAGTTACTCTAGAAGATATGAG
AGAGATTGAGAAAAATCCCCCTGCCCAAGGGAAAAAAGGGTTAAAGATGCCTGTGCCAGG
TAATCCTGCAGTTCCAGGAATTCCCAGTGCGGGAATTCCCAGTGCAGGACTGCCCGGTGC
GGGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCTCTATGTCGTCATAAACAGTATATGGGCAATCGCTTTATTCAAGTTCATCCAAT
TACTAAGAAAGGTATGCTAGAAAAGATAGATATGATTCGAAAAAGACTGCAGAACTTCAG
CTATGACCAGAGGGAAATGATGTTAAATCCAGAGGGGGATGTCAACTCTGCCAAAGTCTG
TGCCCATATAACAAATATTCCCTTCAGCGTTACCAAGATGGATGTTCTTCAGTTCCTAGA
AGGAATCCCAGTGGATGAAAATGCTGTACATGTTCTTGTTGATAACAATGGGCAAGGTCT
AGGACAGGCATTGGTTCAGTTTAAAAATGAAGATGACGCACGTAAGTCTGAACGCTTACA
CCGTAAAAAACTTAATGGGAGAGAAGCTTTTGTTCACGTAGTTACTCTAGAAGATATGAG
AGAGATTGAGAAAAATCCCCCTGCCCAAGGGAAAAAAGGGTTAAAGATGCCTGTGCCAGG
TAATCCTGCAGTTCCAGGAATTCCCAGTGCGGGAATTCCCAGTGCAGGACTGCCCGGTGC
GGGAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               441-547, + strand, RNAz p=0.999337

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-547, + strand, RNAz p=0.999337

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               469-542, + strand, RNAmicro p=0.996908
               

               
               443-555, - strand, RNAmicro p=0.983034

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               469-542, + strand, RNAmicro p=0.996908
               

               
               443-555, - strand, RNAmicro p=0.983034

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-547, gnl|bosTau2|chr13 (45097039-45096493)
               

               
               1-547, gnl|Hg17|chr20 (33705204-33704658)
               

               
               1-547, gnl|Mm7|chr2 (155837754-155837193)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-547, gnl|bosTau2|chr13 (45097039-45096493)
               

               
               1-547, gnl|Hg17|chr20 (33705204-33704658)
               

               
               1-547, gnl|Mm7|chr2 (155837754-155837193)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	469-542, + strand, RNAmicro p=0.996908
	443-555, - strand, RNAmicro p=0.983034

	1-547, gnl\|bosTau2\|chr13 (45097039-45096493)
	1-547, gnl\|Hg17\|chr20 (33705204-33704658)
	1-547, gnl\|Mm7\|chr2 (155837754-155837193)