Non-Coding RNA Search

rnco1936b_o24.y1

Sequence:


               
               CTCTCCTGTCCTGCTCTCCTGCCCCCGGAGATCCTCCAGAGCTGGTGACTCGCGGCCCTC
TGCTTTATTCAACCCTGCAGCAGCAGCAGCAGCGCACTCGAGAGTGGGTGGCGAGACACC
CCCAGATACCTGAGGCCCGGGACCGAGGCCCCATCCGAGCCTGGTCGGTGCTCCCCGACG
ACTTCCCCCGGCTACCCCCGGAACCAGGCTTCTGGGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCCTGTCCTGCTCTCCTGCCCCCGGAGATCCTCCAGAGCTGGTGACTCGCGGCCCTC
TGCTTTATTCAACCCTGCAGCAGCAGCAGCAGCGCACTCGAGAGTGGGTGGCGAGACACC
CCCAGATACCTGAGGCCCGGGACCGAGGCCCCATCCGAGCCTGGTCGGTGCTCCCCGACG
ACTTCCCCCGGCTACCCCCGGAACCAGGCTTCTGGGTCC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-219, gnl|bosTau2|chr6 (48053096-48052878)
               

               
               1-219, gnl|canFam2|chr32 (4439879-4439996)
               

               
               1-219, gnl|danRer3|chrNA (98639668-98639801)
               

               
               1-219, gnl|echTel1|scaffold_251906 (2781-2628)
               

               
               1-219, gnl|fr1|chrUn (168728174-168728299)
               

               
               1-219, gnl|galGal2|chr13 (16051887-16051752)
               

               
               1-219, gnl|hg17|chr4 (78175144-78175285)
               

               
               1-219, gnl|Hg17|chr4 (78175361-78175149)
               

               
               1-219, gnl|mm7|chr5 (93031156-93031303)
               

               
               1-219, gnl|Mm7|chr5 (93031385-93031161)
               

               
               1-219, gnl|monDom2|scaffold_132 (1153295-1153132)
               

               
               1-219, gnl|panTro1|chr3 (55548192-55548051)
               

               
               1-219, gnl|rheMac2|chr5 (52689202-52689061)
               

               
               1-219, gnl|rn3|chr14 (16588756-16588609)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-219, gnl|bosTau2|chr6 (48053096-48052878)
               

               
               1-219, gnl|canFam2|chr32 (4439879-4439996)
               

               
               1-219, gnl|danRer3|chrNA (98639668-98639801)
               

               
               1-219, gnl|echTel1|scaffold_251906 (2781-2628)
               

               
               1-219, gnl|fr1|chrUn (168728174-168728299)
               

               
               1-219, gnl|galGal2|chr13 (16051887-16051752)
               

               
               1-219, gnl|hg17|chr4 (78175144-78175285)
               

               
               1-219, gnl|Hg17|chr4 (78175361-78175149)
               

               
               1-219, gnl|mm7|chr5 (93031156-93031303)
               

               
               1-219, gnl|Mm7|chr5 (93031385-93031161)
               

               
               1-219, gnl|monDom2|scaffold_132 (1153295-1153132)
               

               
               1-219, gnl|panTro1|chr3 (55548192-55548051)
               

               
               1-219, gnl|rheMac2|chr5 (52689202-52689061)
               

               
               1-219, gnl|rn3|chr14 (16588756-16588609)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-219, gnl\|bosTau2\|chr6 (48053096-48052878)
	1-219, gnl\|canFam2\|chr32 (4439879-4439996)
	1-219, gnl\|danRer3\|chrNA (98639668-98639801)
	1-219, gnl\|echTel1\|scaffold_251906 (2781-2628)
	1-219, gnl\|fr1\|chrUn (168728174-168728299)
	1-219, gnl\|galGal2\|chr13 (16051887-16051752)
	1-219, gnl\|hg17\|chr4 (78175144-78175285)
	1-219, gnl\|Hg17\|chr4 (78175361-78175149)
	1-219, gnl\|mm7\|chr5 (93031156-93031303)
	1-219, gnl\|Mm7\|chr5 (93031385-93031161)
	1-219, gnl\|monDom2\|scaffold_132 (1153295-1153132)
	1-219, gnl\|panTro1\|chr3 (55548192-55548051)
	1-219, gnl\|rheMac2\|chr5 (52689202-52689061)
	1-219, gnl\|rn3\|chr14 (16588756-16588609)