Non-Coding RNA Search

rnep07c_a22.y1

Sequence:


               
               GGGGATGGAGAGCGGGTCCCCCAGCAGATTCCCTCTCCAGCCGCTTCTCCATCCAGGAAG
CAGCTGAGAAGGCCTCACACTTTCGCTTTTACTCATTGTCCAGAGGAAAGCAGTTTTCCT
CCAGGAGGCCAAAATAACTGGCTCCCAAGTAGCCAGCTAATGTAGATGCTGCCCAGCATT
TCCCTGCTCAAAGGCCAACTTGGTGCTGGGGAGTCGGGGTCACCTTCTCCTTTCCTGCTG
GCGCATTACAAATCAGTGTTCTTTTGAAAGTCATCAGAAATAGGCTTTTTTAAAAATATT
GTGTATCTGTATATAGTATTGTGATGTCTGAATGACAATGTACTGAATGCAAAAAGGAAA
AAAAAAAAAACAACACCCCACAGACCTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGATGGAGAGCGGGTCCCCCAGCAGATTCCCTCTCCAGCCGCTTCTCCATCCAGGAAG
CAGCTGAGAAGGCCTCACACTTTCGCTTTTACTCATTGTCCAGAGGAAAGCAGTTTTCCT
CCAGGAGGCCAAAATAACTGGCTCCCAAGTAGCCAGCTAATGTAGATGCTGCCCAGCATT
TCCCTGCTCAAAGGCCAACTTGGTGCTGGGGAGTCGGGGTCACCTTCTCCTTTCCTGCTG
GCGCATTACAAATCAGTGTTCTTTTGAAAGTCATCAGAAATAGGCTTTTTTAAAAATATT
GTGTATCTGTATATAGTATTGTGATGTCTGAATGACAATGTACTGAATGCAAAAAGGAAA
AAAAAAAAAACAACACCCCACAGACCTGTT

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-365, gnl|bosTau2|chr5 (16867665-16867298)
               

               
               3-365, gnl|canFam2|chr27 (4317680-4317151)
               

               
               3-365, gnl|dasNov1|scaffold_3122 (27268-27841)
               

               
               3-365, gnl|hg17|chr12 (52625936-52626471)
               

               
               3-365, gnl|Hg17|chr12 (52626184-52626551)
               

               
               3-365, gnl|loxAfr1|scaffold_19230 (38811-39397)
               

               
               3-365, gnl|mm7|chr15 (102914276-102914834)
               

               
               3-365, gnl|Mm7|chr15 (102914538-102914919)
               

               
               3-365, gnl|oryCun1|scaffold_211595 (52100-51578)
               

               
               3-365, gnl|panTro1|chr10 (53874656-53875196)
               

               
               3-365, gnl|rheMac2|chr11 (51043974-51044525)
               

               
               3-365, gnl|rn3|chr7 (141771043-141771562)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-365, gnl|bosTau2|chr5 (16867665-16867298)
               

               
               3-365, gnl|canFam2|chr27 (4317680-4317151)
               

               
               3-365, gnl|dasNov1|scaffold_3122 (27268-27841)
               

               
               3-365, gnl|hg17|chr12 (52625936-52626471)
               

               
               3-365, gnl|Hg17|chr12 (52626184-52626551)
               

               
               3-365, gnl|loxAfr1|scaffold_19230 (38811-39397)
               

               
               3-365, gnl|mm7|chr15 (102914276-102914834)
               

               
               3-365, gnl|Mm7|chr15 (102914538-102914919)
               

               
               3-365, gnl|oryCun1|scaffold_211595 (52100-51578)
               

               
               3-365, gnl|panTro1|chr10 (53874656-53875196)
               

               
               3-365, gnl|rheMac2|chr11 (51043974-51044525)
               

               
               3-365, gnl|rn3|chr7 (141771043-141771562)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	3-365, gnl\|bosTau2\|chr5 (16867665-16867298)
	3-365, gnl\|canFam2\|chr27 (4317680-4317151)
	3-365, gnl\|dasNov1\|scaffold_3122 (27268-27841)
	3-365, gnl\|hg17\|chr12 (52625936-52626471)
	3-365, gnl\|Hg17\|chr12 (52626184-52626551)
	3-365, gnl\|loxAfr1\|scaffold_19230 (38811-39397)
	3-365, gnl\|mm7\|chr15 (102914276-102914834)
	3-365, gnl\|Mm7\|chr15 (102914538-102914919)
	3-365, gnl\|oryCun1\|scaffold_211595 (52100-51578)
	3-365, gnl\|panTro1\|chr10 (53874656-53875196)
	3-365, gnl\|rheMac2\|chr11 (51043974-51044525)
	3-365, gnl\|rn3\|chr7 (141771043-141771562)