rnep08c_m10.y1
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GTTGAGTTCCTGAAATGTTTATTTCAATTGGAGCTGTCTCAGATGCAGACCAACATCACA
GACACCAATGTCATCCTGTCCATGGACAATAACCGCTCCCTGGATCTCGACAGCATCATC
GATGCGGTGCGGACCCAGTATGAGCTGATCGCACAAAAGAGCAAGGAAGAGGCTGAGGCG
CTGTACCAGACCAAGTACCAGGAGCTCCAGATCACAGCCGGAAGACATGGAGATGAGCTG
AAGACCAGCAAGATGGAGATCTCTGAGCTCAATATCACCATCCAGAGGCTGCAGGCAGAG
ATCAGCAATGTCAGGAAGCAGATAGACCAGATGTACACGGCCATTTCTGATGCGGAGGAG
AGAGGAGACCGGGCCCTGAAGGACGCACAGCAGAAGCTGCAGGACATGGAGGACGCCCTG
CAGCAGGCCAAAGAGGACATGGCCCGGCTGCTGCGCG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GTTGAGTTCCTGAAATGTTTATTTCAATTGGAGCTGTCTCAGATGCAGACCAACATCACA
GACACCAATGTCATCCTGTCCATGGACAATAACCGCTCCCTGGATCTCGACAGCATCATC
GATGCGGTGCGGACCCAGTATGAGCTGATCGCACAAAAGAGCAAGGAAGAGGCTGAGGCG
CTGTACCAGACCAAGTACCAGGAGCTCCAGATCACAGCCGGAAGACATGGAGATGAGCTG
AAGACCAGCAAGATGGAGATCTCTGAGCTCAATATCACCATCCAGAGGCTGCAGGCAGAG
ATCAGCAATGTCAGGAAGCAGATAGACCAGATGTACACGGCCATTTCTGATGCGGAGGAG
AGAGGAGACCGGGCCCTGAAGGACGCACAGCAGAAGCTGCAGGACATGGAGGACGCCCTG
CAGCAGGCCAAAGAGGACATGGCCCGGCTGCTGCGCG
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
68-187, - strand, RNAmicro p=0.999558 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
68-187, - strand, RNAmicro p=0.999558 |
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30-195, gnl|bosTau2|chr5 (20208186-20208021) |
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30-195, gnl|canFam2|chr27 (5412832-5412635) |
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30-195, gnl|danRer3|chr23 (6428392-6428568) |
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30-195, gnl|dasNov1|scaffold_13590 (11566-11729) |
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30-195, gnl|echTel1|scaffold_299613 (6409-6597) |
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30-195, gnl|fr1|chrUn (50193840-50194020) |
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30-195, gnl|galGal2|chrUn (7888783-7888599) |
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30-195, gnl|hg17|chr12 (51374664-51374852) |
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30-195, gnl|Hg17|chr12 (51374842-51374677) |
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30-195, gnl|loxAfr1|scaffold_39561 (864-1044) |
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30-195, gnl|mm7|chr15 (101848922-101849110) |
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30-195, gnl|Mm7|chr15 (101849100-101848935) |
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30-195, gnl|monDom2|scaffold_264 (476798-476977) |
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30-195, gnl|oryCun1|scaffold_176185 (84283-84471) |
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30-195, gnl|panTro1|chr10 (52599774-52599962) |
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30-195, gnl|rheMac2|chr11 (49765967-49766155) |
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30-195, gnl|rn3|chr7 (140635585-140635773) |
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30-195, gnl|tetNig1|chrUn_random (43154107-43153950) |
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30-195, gnl|xenTro1|scaffold_312 (1205199-1205379) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
30-195, gnl|bosTau2|chr5 (20208186-20208021) |
|
30-195, gnl|canFam2|chr27 (5412832-5412635) |
|
30-195, gnl|danRer3|chr23 (6428392-6428568) |
|
30-195, gnl|dasNov1|scaffold_13590 (11566-11729) |
|
30-195, gnl|echTel1|scaffold_299613 (6409-6597) |
|
30-195, gnl|fr1|chrUn (50193840-50194020) |
|
30-195, gnl|galGal2|chrUn (7888783-7888599) |
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30-195, gnl|hg17|chr12 (51374664-51374852) |
|
30-195, gnl|Hg17|chr12 (51374842-51374677) |
|
30-195, gnl|loxAfr1|scaffold_39561 (864-1044) |
|
30-195, gnl|mm7|chr15 (101848922-101849110) |
|
30-195, gnl|Mm7|chr15 (101849100-101848935) |
|
30-195, gnl|monDom2|scaffold_264 (476798-476977) |
|
30-195, gnl|oryCun1|scaffold_176185 (84283-84471) |
|
30-195, gnl|panTro1|chr10 (52599774-52599962) |
|
30-195, gnl|rheMac2|chr11 (49765967-49766155) |
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30-195, gnl|rn3|chr7 (140635585-140635773) |
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30-195, gnl|tetNig1|chrUn_random (43154107-43153950) |
|
30-195, gnl|xenTro1|scaffold_312 (1205199-1205379) |