Non-Coding RNA Search

rnep09c_g22.y1

Sequence:


               
               GCCGGCCGGGCCCATGGCCCTCACGAGAGGCTGCGGCTGCTTGGACCTGTGGTCATGGGC
GTTGGCCTGTTCGTGTTCATCTGCGCCAACACGCTGCTCTATGAGAACCGCGATTTGGAA
ACGCGACGGCTTCGCCAGGGGGTGCTGAGGGCTCAGGCGCTGCGGCCCCCCGACGGCCCG
GGCTGGGACTGCGCTCTTCTCCCCAGCCCTGGTCCCAGGACTCCCCGAGCCATTGGCTGC
GTGGAGCAGGAAAGCTGGGACCTGTCCCCGCGTCGGGGTACTTCACCCGTCCCCTCACTG
CGAAGTCTGCGTTCAGAGCCTGCTAATCCTCGCTTGGGGTTACCTGCCCTGCTCAATAGT
TACCCTCTGAAGGGCTCTGGGCTGCACCCACCGTGGGGTCCACGGACCCAGACTGGCCAT
GTGATTATCACCGTGCAGCCCTCTGGTTCCTGCATTGAACATTCCAAGTCTCTGGATCTG
GGACTTGGGGAGCTCCTGCTTGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGCCGGGCCCATGGCCCTCACGAGAGGCTGCGGCTGCTTGGACCTGTGGTCATGGGC
GTTGGCCTGTTCGTGTTCATCTGCGCCAACACGCTGCTCTATGAGAACCGCGATTTGGAA
ACGCGACGGCTTCGCCAGGGGGTGCTGAGGGCTCAGGCGCTGCGGCCCCCCGACGGCCCG
GGCTGGGACTGCGCTCTTCTCCCCAGCCCTGGTCCCAGGACTCCCCGAGCCATTGGCTGC
GTGGAGCAGGAAAGCTGGGACCTGTCCCCGCGTCGGGGTACTTCACCCGTCCCCTCACTG
CGAAGTCTGCGTTCAGAGCCTGCTAATCCTCGCTTGGGGTTACCTGCCCTGCTCAATAGT
TACCCTCTGAAGGGCTCTGGGCTGCACCCACCGTGGGGTCCACGGACCCAGACTGGCCAT
GTGATTATCACCGTGCAGCCCTCTGGTTCCTGCATTGAACATTCCAAGTCTCTGGATCTG
GGACTTGGGGAGCTCCTGCTTGGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52789321|gb|AAH82989.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52789321|gb|AAH82989.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               360-479, - strand, RNAz p=0.723975

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-479, - strand, RNAz p=0.723975

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-506, gnl|bosTau2|chr2 (77229889-77230394)
               

               
               1-506, gnl|Hg17|chr1 (29268647-29268142)
               

               
               1-506, gnl|Mm7|chr4 (131136446-131136941)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-506, gnl|bosTau2|chr2 (77229889-77230394)
               

               
               1-506, gnl|Hg17|chr1 (29268647-29268142)
               

               
               1-506, gnl|Mm7|chr4 (131136446-131136941)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-506, gnl\|bosTau2\|chr2 (77229889-77230394)
	1-506, gnl\|Hg17\|chr1 (29268647-29268142)
	1-506, gnl\|Mm7\|chr4 (131136446-131136941)