Non-Coding RNA Search

rnep12c_p10.y1

Sequence:


               
               GTCTCCTCGGGGACCAGCTACACTGATCCTGCCCTTCAGAGACCCAGGAGTAGGGAGCTT
TGGCCTCCTCTCCGAGACTCAGGCCTGGGGGCACTCTGTAAGCTAGTTGACCTTGGCTCT
CCCGATAACAGAATCCAGTTTCCTTCCTTCCCTCCACAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCCTCGGGGACCAGCTACACTGATCCTGCCCTTCAGAGACCCAGGAGTAGGGAGCTT
TGGCCTCCTCTCCGAGACTCAGGCCTGGGGGCACTCTGTAAGCTAGTTGACCTTGGCTCT
CCCGATAACAGAATCCAGTTTCCTTCCTTCCCTCCACAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-116, - strand, RNAz p=0.950886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, - strand, RNAz p=0.950886

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-160, gnl|bosTau2|chr5 (23034164-23034005)
               

               
               1-160, gnl|canFam2|chr27 (7632750-7632489)
               

               
               1-160, gnl|dasNov1|scaffold_10829 (33220-32963)
               

               
               1-160, gnl|echTel1|scaffold_247507 (11680-11481)
               

               
               1-160, gnl|hg17|chr12 (48779234-48779493)
               

               
               1-160, gnl|Hg17|chr12 (48779379-48779537)
               

               
               1-160, gnl|loxAfr1|scaffold_456 (41575-41837)
               

               
               1-160, gnl|mm7|chr15 (99697854-99698114)
               

               
               1-160, gnl|Mm7|chr15 (99698001-99698153)
               

               
               1-160, gnl|monDom2|scaffold_2 (45804064-45804297)
               

               
               1-160, gnl|oryCun1|scaffold_161752 (8473-8242)
               

               
               1-160, gnl|panTro1|chr10 (49964611-49964871)
               

               
               1-160, gnl|rheMac2|chr11 (47224796-47225056)
               

               
               1-160, gnl|rn3|chr7 (138530168-138530381)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-160, gnl|bosTau2|chr5 (23034164-23034005)
               

               
               1-160, gnl|canFam2|chr27 (7632750-7632489)
               

               
               1-160, gnl|dasNov1|scaffold_10829 (33220-32963)
               

               
               1-160, gnl|echTel1|scaffold_247507 (11680-11481)
               

               
               1-160, gnl|hg17|chr12 (48779234-48779493)
               

               
               1-160, gnl|Hg17|chr12 (48779379-48779537)
               

               
               1-160, gnl|loxAfr1|scaffold_456 (41575-41837)
               

               
               1-160, gnl|mm7|chr15 (99697854-99698114)
               

               
               1-160, gnl|Mm7|chr15 (99698001-99698153)
               

               
               1-160, gnl|monDom2|scaffold_2 (45804064-45804297)
               

               
               1-160, gnl|oryCun1|scaffold_161752 (8473-8242)
               

               
               1-160, gnl|panTro1|chr10 (49964611-49964871)
               

               
               1-160, gnl|rheMac2|chr11 (47224796-47225056)
               

               
               1-160, gnl|rn3|chr7 (138530168-138530381)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-160, gnl\|bosTau2\|chr5 (23034164-23034005)
	1-160, gnl\|canFam2\|chr27 (7632750-7632489)
	1-160, gnl\|dasNov1\|scaffold_10829 (33220-32963)
	1-160, gnl\|echTel1\|scaffold_247507 (11680-11481)
	1-160, gnl\|hg17\|chr12 (48779234-48779493)
	1-160, gnl\|Hg17\|chr12 (48779379-48779537)
	1-160, gnl\|loxAfr1\|scaffold_456 (41575-41837)
	1-160, gnl\|mm7\|chr15 (99697854-99698114)
	1-160, gnl\|Mm7\|chr15 (99698001-99698153)
	1-160, gnl\|monDom2\|scaffold_2 (45804064-45804297)
	1-160, gnl\|oryCun1\|scaffold_161752 (8473-8242)
	1-160, gnl\|panTro1\|chr10 (49964611-49964871)
	1-160, gnl\|rheMac2\|chr11 (47224796-47225056)
	1-160, gnl\|rn3\|chr7 (138530168-138530381)