Non-Coding RNA Search

rnep17c_o20.y1

Sequence:


               
               TCCCCTAAGCCTATCCGCGGAGGCTTGTAAGCGTCCAGGCCCGCAGAATGGCGGGGTTCC
AGCCTGAGGCCACCCCACAGCGAAGAGGTAGGATCTCCAGGAGGCCCGCCGGGGGCGGCC
CGGCGCTGGAGGAGGTGTGCGCCCTGACTGTTGCGCTGCGCCGTCGGCGCGCTGGCATTG
GGCAACGGGCTAATGACATACTCAGCGCCTCGGTATCCGAAGGCTCCGCGTATCCCCCCG
CACAGGCTCACAGCAGCAAAAGAGTCTGGCTCCGCGTTCACGTCTCCAGAGTAGAAACAA
CGTCGCAAGTCCGGGGAGCTCTCGATGAGTCCCTGGAGGGGGACGCCCAGATGCTCTGTG
GCGAAAGCGGGTGCCAGGAACTGAGCATCTGGCGTCAGGTGTAGGTAGAAATCCTCCTGA
AATGCTGTGATCTGAAAAATGAGTCCCTGATCCTCTGAGTCCTCGGGACCCCGCCGGTAA
TAGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCTAAGCCTATCCGCGGAGGCTTGTAAGCGTCCAGGCCCGCAGAATGGCGGGGTTCC
AGCCTGAGGCCACCCCACAGCGAAGAGGTAGGATCTCCAGGAGGCCCGCCGGGGGCGGCC
CGGCGCTGGAGGAGGTGTGCGCCCTGACTGTTGCGCTGCGCCGTCGGCGCGCTGGCATTG
GGCAACGGGCTAATGACATACTCAGCGCCTCGGTATCCGAAGGCTCCGCGTATCCCCCCG
CACAGGCTCACAGCAGCAAAAGAGTCTGGCTCCGCGTTCACGTCTCCAGAGTAGAAACAA
CGTCGCAAGTCCGGGGAGCTCTCGATGAGTCCCTGGAGGGGGACGCCCAGATGCTCTGTG
GCGAAAGCGGGTGCCAGGAACTGAGCATCTGGCGTCAGGTGTAGGTAGAAATCCTCCTGA
AATGCTGTGATCTGAAAAATGAGTCCCTGATCCTCTGAGTCCTCGGGACCCCGCCGGTAA
TAGCGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               279-438, + strand, RNAz p=0.98945

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-438, + strand, RNAz p=0.98945

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               321-433, - strand, RNAmicro p=0.985925
               

               
               329-427, + strand, RNAmicro p=0.982388

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               321-433, - strand, RNAmicro p=0.985925
               

               
               329-427, + strand, RNAmicro p=0.982388

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AK123049, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK123049, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-486, gnl|bosTau2|chr29 (28874314-28874799)
               

               
               1-486, gnl|Hg17|chr11 (129824677-129824192)
               

               
               1-486, gnl|Mm7|chr9 (30822002-30822487)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-486, gnl|bosTau2|chr29 (28874314-28874799)
               

               
               1-486, gnl|Hg17|chr11 (129824677-129824192)
               

               
               1-486, gnl|Mm7|chr9 (30822002-30822487)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nep (0.183925)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	321-433, - strand, RNAmicro p=0.985925
	329-427, + strand, RNAmicro p=0.982388

	1-486, gnl\|bosTau2\|chr29 (28874314-28874799)
	1-486, gnl\|Hg17\|chr11 (129824677-129824192)
	1-486, gnl\|Mm7\|chr9 (30822002-30822487)