Non-Coding RNA Search

rnep21cc_a5.y1

Sequence:


               
               GGGCACCATTATACAGTAGACAGATACACGCGGCGGGTCTGGGTCCTGGCCTAGCTGGCA
TCCTGCAGCCGGAGCCCCGGGCCAGCTCCCTGCGGTCCCTCGACGGGCGACGCTGCCTGA
GTCGGGGCGTCCGCCAGCTCTAGGTCCCGTTCTTCAGCTCCCACTCCTTGGCCTTCCGAA
GCACGTGGCCCCGGCACGGAGAGCTGCCGGGCGCCGGCTGGCTCTTCCTCAGGACGGCCG
CGCTGTTGACAGGCACCGGGCCCTCCGCGTCGCTGGTTTCACAGCTGGACAGGGGCGAGT
TCTCCAGAGTCCGATGCCGAAACACCGGAGACTGCGGACTTGACGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCACCATTATACAGTAGACAGATACACGCGGCGGGTCTGGGTCCTGGCCTAGCTGGCA
TCCTGCAGCCGGAGCCCCGGGCCAGCTCCCTGCGGTCCCTCGACGGGCGACGCTGCCTGA
GTCGGGGCGTCCGCCAGCTCTAGGTCCCGTTCTTCAGCTCCCACTCCTTGGCCTTCCGAA
GCACGTGGCCCCGGCACGGAGAGCTGCCGGGCGCCGGCTGGCTCTTCCTCAGGACGGCCG
CGCTGTTGACAGGCACCGGGCCCTCCGCGTCGCTGGTTTCACAGCTGGACAGGGGCGAGT
TCTCCAGAGTCCGATGCCGAAACACCGGAGACTGCGGACTTGACGTCCC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               166-334, gnl|bosTau2|chr6 (68695494-68695662)
               

               
               166-334, gnl|canFam2|chr3 (62512634-62512834)
               

               
               166-334, gnl|danRer3|chr12 (17986784-17986979)
               

               
               166-334, gnl|galGal2|chr4 (80851962-80852150)
               

               
               166-334, gnl|hg17|chr4 (7888634-7888836)
               

               
               166-334, gnl|Hg17|chr4 (7888641-7888807)
               

               
               166-334, gnl|mm7|chr5 (35060085-35059884)
               

               
               166-334, gnl|Mm7|chr5 (35060077-35059909)
               

               
               166-334, gnl|monDom2|scaffold_10 (36761804-36762010)
               

               
               166-334, gnl|oryCun1|scaffold_54481 (267-66)
               

               
               166-334, gnl|panTro1|chr3 (7968550-7968752)
               

               
               166-334, gnl|rheMac2|chr5 (1011615-1011415)
               

               
               166-334, gnl|rn3|chr14 (80360364-80360564)
               

               
               166-334, gnl|xenTro1|scaffold_119 (1466532-1466360)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-334, gnl|bosTau2|chr6 (68695494-68695662)
               

               
               166-334, gnl|canFam2|chr3 (62512634-62512834)
               

               
               166-334, gnl|danRer3|chr12 (17986784-17986979)
               

               
               166-334, gnl|galGal2|chr4 (80851962-80852150)
               

               
               166-334, gnl|hg17|chr4 (7888634-7888836)
               

               
               166-334, gnl|Hg17|chr4 (7888641-7888807)
               

               
               166-334, gnl|mm7|chr5 (35060085-35059884)
               

               
               166-334, gnl|Mm7|chr5 (35060077-35059909)
               

               
               166-334, gnl|monDom2|scaffold_10 (36761804-36762010)
               

               
               166-334, gnl|oryCun1|scaffold_54481 (267-66)
               

               
               166-334, gnl|panTro1|chr3 (7968550-7968752)
               

               
               166-334, gnl|rheMac2|chr5 (1011615-1011415)
               

               
               166-334, gnl|rn3|chr14 (80360364-80360564)
               

               
               166-334, gnl|xenTro1|scaffold_119 (1466532-1466360)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	166-334, gnl\|bosTau2\|chr6 (68695494-68695662)
	166-334, gnl\|canFam2\|chr3 (62512634-62512834)
	166-334, gnl\|danRer3\|chr12 (17986784-17986979)
	166-334, gnl\|galGal2\|chr4 (80851962-80852150)
	166-334, gnl\|hg17\|chr4 (7888634-7888836)
	166-334, gnl\|Hg17\|chr4 (7888641-7888807)
	166-334, gnl\|mm7\|chr5 (35060085-35059884)
	166-334, gnl\|Mm7\|chr5 (35060077-35059909)
	166-334, gnl\|monDom2\|scaffold_10 (36761804-36762010)
	166-334, gnl\|oryCun1\|scaffold_54481 (267-66)
	166-334, gnl\|panTro1\|chr3 (7968550-7968752)
	166-334, gnl\|rheMac2\|chr5 (1011615-1011415)
	166-334, gnl\|rn3\|chr14 (80360364-80360564)
	166-334, gnl\|xenTro1\|scaffold_119 (1466532-1466360)