Non-Coding RNA Search

rnep23c_m14.y1

Sequence:


               
               GTGCAGACAGGATTTTTGAAAACTCCTGTCTGCCCACAGCCTTTGAAGGGAGACTTTACC
CTGGGCACTAGGACTTTAAAACTAGGCGCTAGGTAGCCCCTTCCCAGAGAAGCCCCGCCG
CTCTTCTCAGCTTGCAGAGTATAAATGCAGAAAGCCCACCAAGGCTGTCAAGCAGCGGGA
GCTCAAGACCCAGCAGTTGGGTGCAGCTGCTCAGAAACAGGAGGGGCATTTGTTAGCAAG
CTGGCACAGCCACAGACAGCTAAGCACAGAAGTTGTCACTAGTGGAGCTCAGTGCTGGCC
TCGTGAGGCCAAGAGATGACTCTTACAACTTATGGTCTACAAGTCAGCTCAGTTTCCTTG
ATGCAGGATTCACCAAAGCAATCAATGACATTAACCAATGGTTCCAGAAGACAGATCCTT
CTGAACCACCCAGGGGACCTCCTTCCCAGAAGTCCTTGTCCAGTGGCTCCAGACACCCTC
AAAGCTAATTTGGGGAATGCATGGCATAACTTCTAAATTTTCCTTTCTCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCAGACAGGATTTTTGAAAACTCCTGTCTGCCCACAGCCTTTGAAGGGAGACTTTACC
CTGGGCACTAGGACTTTAAAACTAGGCGCTAGGTAGCCCCTTCCCAGAGAAGCCCCGCCG
CTCTTCTCAGCTTGCAGAGTATAAATGCAGAAAGCCCACCAAGGCTGTCAAGCAGCGGGA
GCTCAAGACCCAGCAGTTGGGTGCAGCTGCTCAGAAACAGGAGGGGCATTTGTTAGCAAG
CTGGCACAGCCACAGACAGCTAAGCACAGAAGTTGTCACTAGTGGAGCTCAGTGCTGGCC
TCGTGAGGCCAAGAGATGACTCTTACAACTTATGGTCTACAAGTCAGCTCAGTTTCCTTG
ATGCAGGATTCACCAAAGCAATCAATGACATTAACCAATGGTTCCAGAAGACAGATCCTT
CTGAACCACCCAGGGGACCTCCTTCCCAGAAGTCCTTGTCCAGTGGCTCCAGACACCCTC
AAAGCTAATTTGGGGAATGCATGGCATAACTTCTAAATTTTCCTTTCTCTTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               66-214, - strand, RNAz p=0.998264

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               66-214, - strand, RNAz p=0.998264

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               26-528, gnl|bosTau2|chr5 (19895566-19895057)
               

               
               26-528, gnl|canFam2|chr27 (5647543-5647185)
               

               
               26-528, gnl|dasNov1|scaffold_14430 (41117-41486)
               

               
               26-528, gnl|echTel1|scaffold_284717 (1342-1789)
               

               
               26-528, gnl|hg17|chr12 (51105954-51106331)
               

               
               26-528, gnl|Hg17|chr12 (51106490-51105970)
               

               
               26-528, gnl|loxAfr1|scaffold_16127 (12743-13093)
               

               
               26-528, gnl|oryCun1|scaffold_205889 (46093-46392)
               

               
               26-528, gnl|panTro1|chr10 (52328676-52329052)
               

               
               26-528, gnl|rheMac2|chr11 (49527263-49527637)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-528, gnl|bosTau2|chr5 (19895566-19895057)
               

               
               26-528, gnl|canFam2|chr27 (5647543-5647185)
               

               
               26-528, gnl|dasNov1|scaffold_14430 (41117-41486)
               

               
               26-528, gnl|echTel1|scaffold_284717 (1342-1789)
               

               
               26-528, gnl|hg17|chr12 (51105954-51106331)
               

               
               26-528, gnl|Hg17|chr12 (51106490-51105970)
               

               
               26-528, gnl|loxAfr1|scaffold_16127 (12743-13093)
               

               
               26-528, gnl|oryCun1|scaffold_205889 (46093-46392)
               

               
               26-528, gnl|panTro1|chr10 (52328676-52329052)
               

               
               26-528, gnl|rheMac2|chr11 (49527263-49527637)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	26-528, gnl\|bosTau2\|chr5 (19895566-19895057)
	26-528, gnl\|canFam2\|chr27 (5647543-5647185)
	26-528, gnl\|dasNov1\|scaffold_14430 (41117-41486)
	26-528, gnl\|echTel1\|scaffold_284717 (1342-1789)
	26-528, gnl\|hg17\|chr12 (51105954-51106331)
	26-528, gnl\|Hg17\|chr12 (51106490-51105970)
	26-528, gnl\|loxAfr1\|scaffold_16127 (12743-13093)
	26-528, gnl\|oryCun1\|scaffold_205889 (46093-46392)
	26-528, gnl\|panTro1\|chr10 (52328676-52329052)
	26-528, gnl\|rheMac2\|chr11 (49527263-49527637)