Non-Coding RNA Search

rnep26c_m21.y1

Sequence:


               
               GCTCTCAGTCTCTGCCCTGTATCTTCCTTCTCTCCTGGCCATGGTACCTTCATCCACCAT
CTCTCTGGGAGTATCTTGTTCTTTCCCAGCTCTCTTTCTCTCTCCTCACCTCTTCTTTTT
CTCTCTGCAGCTGTAGCCAGCTGGAAGGGGGCTCAGGTACCTGGGCAGGCTCCTCCCTGC
GACGGACCCTCAGCTTCATCTTGGGCATGACCGGAAAGGCCAAGGTAGGAGTGCAGGGCG
GTGGGGGGGGAGTACCCAGGGAGGGAGAAGAAGGCTCGGGACCCACTGCCCTCCCTGATT
CTTCCTCTCCACCTACCATCTGCTCTCTTCCCCAGCTTCTCCTGGTGGCAAAGACTCAGG
GCAATGGTTCAAGTTTGAAGGGAAATGTTATGTGTCCCTCTCTCCCTCCCTGTATCCCAG
TAAACTACCTTTGCTCTGCTTTCCCCATGCCTCCAGCTTCTCAGCCAGCTGTAGACAGCT
GGAAGAGGAGAAGGGCCAGGAACCTCGGAAGCTGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTCAGTCTCTGCCCTGTATCTTCCTTCTCTCCTGGCCATGGTACCTTCATCCACCAT
CTCTCTGGGAGTATCTTGTTCTTTCCCAGCTCTCTTTCTCTCTCCTCACCTCTTCTTTTT
CTCTCTGCAGCTGTAGCCAGCTGGAAGGGGGCTCAGGTACCTGGGCAGGCTCCTCCCTGC
GACGGACCCTCAGCTTCATCTTGGGCATGACCGGAAAGGCCAAGGTAGGAGTGCAGGGCG
GTGGGGGGGGAGTACCCAGGGAGGGAGAAGAAGGCTCGGGACCCACTGCCCTCCCTGATT
CTTCCTCTCCACCTACCATCTGCTCTCTTCCCCAGCTTCTCCTGGTGGCAAAGACTCAGG
GCAATGGTTCAAGTTTGAAGGGAAATGTTATGTGTCCCTCTCTCCCTCCCTGTATCCCAG
TAAACTACCTTTGCTCTGCTTTCCCCATGCCTCCAGCTTCTCAGCCAGCTGTAGACAGCT
GGAAGAGGAGAAGGGCCAGGAACCTCGGAAGCTGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               403-517, - strand, RNAz p=0.981741

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               403-517, - strand, RNAz p=0.981741

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-245, gnl|bosTau2|chr3 (10631353-10631599)
               

               
               2-245, gnl|canFam2|chr7 (44795167-44794806)
               

               
               2-245, gnl|echTel1|scaffold_193560 (10803-10396)
               

               
               2-245, gnl|hg17|chr1 (152765909-152766283)
               

               
               2-245, gnl|Hg17|chr1 (152766193-152765947)
               

               
               2-245, gnl|mm7|chr3 (88730514-88730206)
               

               
               2-245, gnl|monDom2|scaffold_59 (1554394-1553946)
               

               
               2-245, gnl|oryCun1|scaffold_130047 (10642-10262)
               

               
               2-245, gnl|panTro1|chr1_random (25524988-25525362)
               

               
               2-245, gnl|rheMac2|chr1 (134563929-134564302)
               

               
               2-245, gnl|rn3|chr2 (180693603-180693312)
               


               
               263-517, gnl|bosTau2|chr3 (10631591-10631848)
               

               
               263-517, gnl|Hg17|chr1 (152765955-152765521)
               

               
               263-517, gnl|Mm7|chr3 (88730470-88730679)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-245, gnl|bosTau2|chr3 (10631353-10631599)
               

               
               2-245, gnl|canFam2|chr7 (44795167-44794806)
               

               
               2-245, gnl|echTel1|scaffold_193560 (10803-10396)
               

               
               2-245, gnl|hg17|chr1 (152765909-152766283)
               

               
               2-245, gnl|Hg17|chr1 (152766193-152765947)
               

               
               2-245, gnl|mm7|chr3 (88730514-88730206)
               

               
               2-245, gnl|monDom2|scaffold_59 (1554394-1553946)
               

               
               2-245, gnl|oryCun1|scaffold_130047 (10642-10262)
               

               
               2-245, gnl|panTro1|chr1_random (25524988-25525362)
               

               
               2-245, gnl|rheMac2|chr1 (134563929-134564302)
               

               
               2-245, gnl|rn3|chr2 (180693603-180693312)
               


               
               263-517, gnl|bosTau2|chr3 (10631591-10631848)
               

               
               263-517, gnl|Hg17|chr1 (152765955-152765521)
               

               
               263-517, gnl|Mm7|chr3 (88730470-88730679)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	2-245, gnl\|bosTau2\|chr3 (10631353-10631599)
	2-245, gnl\|canFam2\|chr7 (44795167-44794806)
	2-245, gnl\|echTel1\|scaffold_193560 (10803-10396)
	2-245, gnl\|hg17\|chr1 (152765909-152766283)
	2-245, gnl\|Hg17\|chr1 (152766193-152765947)
	2-245, gnl\|mm7\|chr3 (88730514-88730206)
	2-245, gnl\|monDom2\|scaffold_59 (1554394-1553946)
	2-245, gnl\|oryCun1\|scaffold_130047 (10642-10262)
	2-245, gnl\|panTro1\|chr1_random (25524988-25525362)
	2-245, gnl\|rheMac2\|chr1 (134563929-134564302)
	2-245, gnl\|rn3\|chr2 (180693603-180693312)

	263-517, gnl\|bosTau2\|chr3 (10631591-10631848)
	263-517, gnl\|Hg17\|chr1 (152765955-152765521)
	263-517, gnl\|Mm7\|chr3 (88730470-88730679)