Non-Coding RNA Search

rnep28c_h21.y1

Sequence:


               
               TCGAGTTTTTTTTTTTTTTTTTTCTTTTCTTACTTCAACCGATTTTGAAAATAAATTCAC
GCTGCTGTCCCAGGATTCACTGCTTTCTTCAAATGGATTTTTCTTCCTTGGCAGTGTTGC
AAATTTTTGGGGTAATGAAGCAGTCACATTTGTAAATGGGTCACTTTGTCTTCCGAAAGA
CGATTCACCTTCTTCCACATTGCTGTCAGGTTGGTTCATTTTAGAAGTATCAAAGCTTAA
TGTTCTTCTGTGTGGAGATTTGAGACTTCCACTTTCCGGAACTGCTCCAAAGGGCTCTAT
CTGGCGTCCGAGAAGATGAGTTTGAGCGATGGCGCCCGACTTCAGCTTCTCCGAAGAAAT
GTGGGCCCCAGTTAAATCAGACATTGAATGCGCCGAAGAGAGTCGCTGAGGACCCAAAAG
GAAAGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGTTTTTTTTTTTTTTTTTTCTTTTCTTACTTCAACCGATTTTGAAAATAAATTCAC
GCTGCTGTCCCAGGATTCACTGCTTTCTTCAAATGGATTTTTCTTCCTTGGCAGTGTTGC
AAATTTTTGGGGTAATGAAGCAGTCACATTTGTAAATGGGTCACTTTGTCTTCCGAAAGA
CGATTCACCTTCTTCCACATTGCTGTCAGGTTGGTTCATTTTAGAAGTATCAAAGCTTAA
TGTTCTTCTGTGTGGAGATTTGAGACTTCCACTTTCCGGAACTGCTCCAAAGGGCTCTAT
CTGGCGTCCGAGAAGATGAGTTTGAGCGATGGCGCCCGACTTCAGCTTCTCCGAAGAAAT
GTGGGCCCCAGTTAAATCAGACATTGAATGCGCCGAAGAGAGTCGCTGAGGACCCAAAAG
GAAAGGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55634613|ref|XP_529351.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55634613|ref|XP_529351.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               6-124, + strand, RNAz p=0.815524

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-124, + strand, RNAz p=0.815524

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               6-270, gnl|bosTau2|chr26 (26585000-26585264)
               

               
               6-270, gnl|canFam2|chr28 (31450366-31450666)
               

               
               6-270, gnl|danRer3|chr13 (10198305-10198540)
               

               
               6-270, gnl|dasNov1|scaffold_477 (9024-9324)
               

               
               6-270, gnl|echTel1|scaffold_56163 (2355-2052)
               

               
               6-270, gnl|fr1|chrUn (158580462-158580721)
               

               
               6-270, gnl|galGal2|chr6 (28544752-28545053)
               

               
               6-270, gnl|hg17|chr10 (119788548-119788848)
               

               
               6-270, gnl|Hg17|chr10 (119788678-119788942)
               

               
               6-270, gnl|loxAfr1|scaffold_39770 (3203-2903)
               

               
               6-270, gnl|mm7|chr19 (59860708-59861008)
               

               
               6-270, gnl|Mm7|chr19 (59860838-59861102)
               

               
               6-270, gnl|monDom2|scaffold_14 (42787695-42787395)
               

               
               6-270, gnl|oryCun1|scaffold_200423 (83332-83032)
               

               
               6-270, gnl|panTro1|chr8 (122046442-122046742)
               

               
               6-270, gnl|rheMac2|chr9 (117657423-117657723)
               

               
               6-270, gnl|rn3|chr1 (266701218-266701518)
               

               
               6-270, gnl|tetNig1|chr17 (701572-701825)
               

               
               6-270, gnl|xenTro1|scaffold_1269 (218530-218828)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-270, gnl|bosTau2|chr26 (26585000-26585264)
               

               
               6-270, gnl|canFam2|chr28 (31450366-31450666)
               

               
               6-270, gnl|danRer3|chr13 (10198305-10198540)
               

               
               6-270, gnl|dasNov1|scaffold_477 (9024-9324)
               

               
               6-270, gnl|echTel1|scaffold_56163 (2355-2052)
               

               
               6-270, gnl|fr1|chrUn (158580462-158580721)
               

               
               6-270, gnl|galGal2|chr6 (28544752-28545053)
               

               
               6-270, gnl|hg17|chr10 (119788548-119788848)
               

               
               6-270, gnl|Hg17|chr10 (119788678-119788942)
               

               
               6-270, gnl|loxAfr1|scaffold_39770 (3203-2903)
               

               
               6-270, gnl|mm7|chr19 (59860708-59861008)
               

               
               6-270, gnl|Mm7|chr19 (59860838-59861102)
               

               
               6-270, gnl|monDom2|scaffold_14 (42787695-42787395)
               

               
               6-270, gnl|oryCun1|scaffold_200423 (83332-83032)
               

               
               6-270, gnl|panTro1|chr8 (122046442-122046742)
               

               
               6-270, gnl|rheMac2|chr9 (117657423-117657723)
               

               
               6-270, gnl|rn3|chr1 (266701218-266701518)
               

               
               6-270, gnl|tetNig1|chr17 (701572-701825)
               

               
               6-270, gnl|xenTro1|scaffold_1269 (218530-218828)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	6-270, gnl\|bosTau2\|chr26 (26585000-26585264)
	6-270, gnl\|canFam2\|chr28 (31450366-31450666)
	6-270, gnl\|danRer3\|chr13 (10198305-10198540)
	6-270, gnl\|dasNov1\|scaffold_477 (9024-9324)
	6-270, gnl\|echTel1\|scaffold_56163 (2355-2052)
	6-270, gnl\|fr1\|chrUn (158580462-158580721)
	6-270, gnl\|galGal2\|chr6 (28544752-28545053)
	6-270, gnl\|hg17\|chr10 (119788548-119788848)
	6-270, gnl\|Hg17\|chr10 (119788678-119788942)
	6-270, gnl\|loxAfr1\|scaffold_39770 (3203-2903)
	6-270, gnl\|mm7\|chr19 (59860708-59861008)
	6-270, gnl\|Mm7\|chr19 (59860838-59861102)
	6-270, gnl\|monDom2\|scaffold_14 (42787695-42787395)
	6-270, gnl\|oryCun1\|scaffold_200423 (83332-83032)
	6-270, gnl\|panTro1\|chr8 (122046442-122046742)
	6-270, gnl\|rheMac2\|chr9 (117657423-117657723)
	6-270, gnl\|rn3\|chr1 (266701218-266701518)
	6-270, gnl\|tetNig1\|chr17 (701572-701825)
	6-270, gnl\|xenTro1\|scaffold_1269 (218530-218828)