Non-Coding RNA Search

rnep30c_c19.y1

Sequence:


               
               TCTTCCCAGAGCCATTCTCCAGGTGGCCAGCCCTTCCCCACGCTCCCCAGCAAGCCACCC
TATCCTCCCTTCCAGAACCCTCCACCCCAGCCTCTGCCCAGCCCGCAAGGCTACCAAGGA
AGTTTCCACTCCATCCAGAATTGCTTCCCCTACGGGGACTGCTACCGGTCAGCTGAGCCC
GCAGCCAGTGGGGACGGACTGGCCGGGGAGGCCCATGGTTTCAACCCTCTGCGGCCCAAT
GGCTACCACAGCCTCAGTGCACCTTTAGCTGCCACAGGCTACGAGGCCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCCCAGAGCCATTCTCCAGGTGGCCAGCCCTTCCCCACGCTCCCCAGCAAGCCACCC
TATCCTCCCTTCCAGAACCCTCCACCCCAGCCTCTGCCCAGCCCGCAAGGCTACCAAGGA
AGTTTCCACTCCATCCAGAATTGCTTCCCCTACGGGGACTGCTACCGGTCAGCTGAGCCC
GCAGCCAGTGGGGACGGACTGGCCGGGGAGGCCCATGGTTTCAACCCTCTGCGGCCCAAT
GGCTACCACAGCCTCAGTGCACCTTTAGCTGCCACAGGCTACGAGGCCCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61845936|ref|XP_581737.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61845936|ref|XP_581737.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               94-212, - strand, RNAz p=0.73616

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-212, - strand, RNAz p=0.73616

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               94-278, gnl|bosTau2|chr3 (61568651-61568467)
               

               
               94-278, gnl|canFam2|chr5 (58454821-58454634)
               

               
               94-278, gnl|echTel1|scaffold_303217 (5618-5431)
               

               
               94-278, gnl|hg17|chr1 (53686810-53686998)
               

               
               94-278, gnl|Hg17|chr1 (53686997-53686813)
               

               
               94-278, gnl|loxAfr1|scaffold_524 (125027-124840)
               

               
               94-278, gnl|mm7|chr4 (107008874-107008689)
               

               
               94-278, gnl|Mm7|chr4 (107008685-107008869)
               

               
               94-278, gnl|monDom2|scaffold_399 (5794-5980)
               

               
               94-278, gnl|oryCun1|scaffold_195498 (14422-14235)
               

               
               94-278, gnl|panTro1|chr1 (51933312-51933500)
               

               
               94-278, gnl|rheMac2|chr1 (56369248-56369436)
               

               
               94-278, gnl|rn3|chr5 (128742111-128741926)
               

               
               94-278, gnl|tetNig1|chr1 (9875937-9875769)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-278, gnl|bosTau2|chr3 (61568651-61568467)
               

               
               94-278, gnl|canFam2|chr5 (58454821-58454634)
               

               
               94-278, gnl|echTel1|scaffold_303217 (5618-5431)
               

               
               94-278, gnl|hg17|chr1 (53686810-53686998)
               

               
               94-278, gnl|Hg17|chr1 (53686997-53686813)
               

               
               94-278, gnl|loxAfr1|scaffold_524 (125027-124840)
               

               
               94-278, gnl|mm7|chr4 (107008874-107008689)
               

               
               94-278, gnl|Mm7|chr4 (107008685-107008869)
               

               
               94-278, gnl|monDom2|scaffold_399 (5794-5980)
               

               
               94-278, gnl|oryCun1|scaffold_195498 (14422-14235)
               

               
               94-278, gnl|panTro1|chr1 (51933312-51933500)
               

               
               94-278, gnl|rheMac2|chr1 (56369248-56369436)
               

               
               94-278, gnl|rn3|chr5 (128742111-128741926)
               

               
               94-278, gnl|tetNig1|chr1 (9875937-9875769)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	94-278, gnl\|bosTau2\|chr3 (61568651-61568467)
	94-278, gnl\|canFam2\|chr5 (58454821-58454634)
	94-278, gnl\|echTel1\|scaffold_303217 (5618-5431)
	94-278, gnl\|hg17\|chr1 (53686810-53686998)
	94-278, gnl\|Hg17\|chr1 (53686997-53686813)
	94-278, gnl\|loxAfr1\|scaffold_524 (125027-124840)
	94-278, gnl\|mm7\|chr4 (107008874-107008689)
	94-278, gnl\|Mm7\|chr4 (107008685-107008869)
	94-278, gnl\|monDom2\|scaffold_399 (5794-5980)
	94-278, gnl\|oryCun1\|scaffold_195498 (14422-14235)
	94-278, gnl\|panTro1\|chr1 (51933312-51933500)
	94-278, gnl\|rheMac2\|chr1 (56369248-56369436)
	94-278, gnl\|rn3\|chr5 (128742111-128741926)
	94-278, gnl\|tetNig1\|chr1 (9875937-9875769)