Non-Coding RNA Search

rnep30c_g8.y1

Sequence:


               
               GGCGTTAGAATCCCCCGGGGCTTAAACCTCCAGGTTAAACCCGGCGAGCCGGACCTCCCT
GCAGTTCCTGAGCCCTCTGATCTGGGGCGGGTCCCGAGAAGGTGTATTTCTAACCAGCTG
CCAGGTGCCGCTGCTGGTCGGGGTCCCCACGTTGCGAACCCCTGAAGCCCATTTCTGTAC
TTGAGTTTCCAGTGCTCGGCAGAAATACCACCGCGATGACCCGTGTCGTCTCACGTGTGT
CGCAGTTTCTCTTTTCCTTTAAAATAATAATCCAATGTCGGTTATCATTGGAATTTCCCG
TTCTGGCAGGAAATTCTGCCCTTAACGCCCGCTCACACCTCACGGAGCCCCACGAGGTTT
TCCTGTGAAGATCTGGGTGCCGAAATTGGCTCCGAATGTTCTGCGAGAAAACAAAATCAC
GCTCTCTCACTCGCTCGCTCTCTCACTCTACGTATTTTAAACAAACACAGATGCTGATAC
GTTCGTGCTGGCAAGAGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGTTAGAATCCCCCGGGGCTTAAACCTCCAGGTTAAACCCGGCGAGCCGGACCTCCCT
GCAGTTCCTGAGCCCTCTGATCTGGGGCGGGTCCCGAGAAGGTGTATTTCTAACCAGCTG
CCAGGTGCCGCTGCTGGTCGGGGTCCCCACGTTGCGAACCCCTGAAGCCCATTTCTGTAC
TTGAGTTTCCAGTGCTCGGCAGAAATACCACCGCGATGACCCGTGTCGTCTCACGTGTGT
CGCAGTTTCTCTTTTCCTTTAAAATAATAATCCAATGTCGGTTATCATTGGAATTTCCCG
TTCTGGCAGGAAATTCTGCCCTTAACGCCCGCTCACACCTCACGGAGCCCCACGAGGTTT
TCCTGTGAAGATCTGGGTGCCGAAATTGGCTCCGAATGTTCTGCGAGAAAACAAAATCAC
GCTCTCTCACTCGCTCGCTCTCTCACTCTACGTATTTTAAACAAACACAGATGCTGATAC
GTTCGTGCTGGCAAGAGATCC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-115, - strand, RNAz p=0.970574
               

               
               24-126, - strand, RNAz p=0.944193
               

               
               225-344, - strand, RNAz p=0.734755
               

               
               268-363, - strand, RNAz p=0.790626

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, - strand, RNAz p=0.970574
               

               
               24-126, - strand, RNAz p=0.944193
               

               
               225-344, - strand, RNAz p=0.734755
               

               
               268-363, - strand, RNAz p=0.790626

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-501, gnl|bosTau2|chrX (41210686-41210194)
               

               
               1-501, gnl|canFam2|chrX (6868117-6868432)
               

               
               1-501, gnl|dasNov1|scaffold_1004 (60621-60948)
               

               
               1-501, gnl|Hg17|chrX (10000772-10001270)
               

               
               1-501, gnl|hg17|chrY (6723637-6723994)
               

               
               1-501, gnl|loxAfr1|scaffold_44041 (3475-3069)
               

               
               1-501, gnl|panTro1|chrY (2675507-2675864)
               

               
               1-501, gnl|rheMac2|chrX (7853642-7853979)
               

               
               1-501, gnl|rn3|chrX (44464780-44465102)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-501, gnl|bosTau2|chrX (41210686-41210194)
               

               
               1-501, gnl|canFam2|chrX (6868117-6868432)
               

               
               1-501, gnl|dasNov1|scaffold_1004 (60621-60948)
               

               
               1-501, gnl|Hg17|chrX (10000772-10001270)
               

               
               1-501, gnl|hg17|chrY (6723637-6723994)
               

               
               1-501, gnl|loxAfr1|scaffold_44041 (3475-3069)
               

               
               1-501, gnl|panTro1|chrY (2675507-2675864)
               

               
               1-501, gnl|rheMac2|chrX (7853642-7853979)
               

               
               1-501, gnl|rn3|chrX (44464780-44465102)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-115, - strand, RNAz p=0.970574
	24-126, - strand, RNAz p=0.944193
	225-344, - strand, RNAz p=0.734755
	268-363, - strand, RNAz p=0.790626

	1-501, gnl\|bosTau2\|chrX (41210686-41210194)
	1-501, gnl\|canFam2\|chrX (6868117-6868432)
	1-501, gnl\|dasNov1\|scaffold_1004 (60621-60948)
	1-501, gnl\|Hg17\|chrX (10000772-10001270)
	1-501, gnl\|hg17\|chrY (6723637-6723994)
	1-501, gnl\|loxAfr1\|scaffold_44041 (3475-3069)
	1-501, gnl\|panTro1\|chrY (2675507-2675864)
	1-501, gnl\|rheMac2\|chrX (7853642-7853979)
	1-501, gnl\|rn3\|chrX (44464780-44465102)