Non-Coding RNA Search

rnep31c_h18.y1

Sequence:


               
               CAGGACCCAAGGGGCCTCCAGAAGCAGCTTTGGGCTCTTAGACTGAAGCTAAGTCCCAGG
CTTATCCGGCCCACCTGGGGCCCAGGGAGCCCACAGACCCTTCAGTTTTTTCAGTACACT
GAATCAATGGCAGGGGAAAGGGATCAAGCCTTGGGGACACGTGAGTGAAGGGGCAGGCTC
AGAAAAGGGTTTCATAACTGGGGTCCCTCTGCTCATGGGCTGCAAACCTTTGTTGCCAAA
GGCTTCAGCTTTATGCCTCCAAGTCCACACCCCATGGAGCTTCAATTTCTCACAAAGCCT
CCCTCAGAGACCCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGACCCAAGGGGCCTCCAGAAGCAGCTTTGGGCTCTTAGACTGAAGCTAAGTCCCAGG
CTTATCCGGCCCACCTGGGGCCCAGGGAGCCCACAGACCCTTCAGTTTTTTCAGTACACT
GAATCAATGGCAGGGGAAAGGGATCAAGCCTTGGGGACACGTGAGTGAAGGGGCAGGCTC
AGAAAAGGGTTTCATAACTGGGGTCCCTCTGCTCATGGGCTGCAAACCTTTGTTGCCAAA
GGCTTCAGCTTTATGCCTCCAAGTCCACACCCCATGGAGCTTCAATTTCTCACAAAGCCT
CCCTCAGAGACCCAGGC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-115, - strand, RNAz p=0.998851
               

               
               155-317, - strand, RNAz p=0.904084
               

               
               202-317, - strand, RNAz p=0.989911

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, - strand, RNAz p=0.998851
               

               
               155-317, - strand, RNAz p=0.904084
               

               
               202-317, - strand, RNAz p=0.989911

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-317, gnl|bosTau2|chr2 (60605638-60605957)
               

               
               1-317, gnl|canFam2|chr2 (82711309-82710864)
               

               
               1-317, gnl|dasNov1|scaffold_36767 (40546-40142)
               

               
               1-317, gnl|echTel1|scaffold_237952 (3300-2884)
               

               
               1-317, gnl|hg17|chr1 (18817273-18817771)
               

               
               1-317, gnl|Hg17|chr1 (18817483-18817808)
               

               
               1-317, gnl|loxAfr1|scaffold_48915 (3042-3513)
               

               
               1-317, gnl|mm7|chr4 (139118711-139118341)
               

               
               1-317, gnl|panTro1|chr1 (19044692-19045190)
               

               
               1-317, gnl|rheMac2|chr1 (21393778-21394276)
               

               
               1-317, gnl|rn3|chr5 (158557302-158556943)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-317, gnl|bosTau2|chr2 (60605638-60605957)
               

               
               1-317, gnl|canFam2|chr2 (82711309-82710864)
               

               
               1-317, gnl|dasNov1|scaffold_36767 (40546-40142)
               

               
               1-317, gnl|echTel1|scaffold_237952 (3300-2884)
               

               
               1-317, gnl|hg17|chr1 (18817273-18817771)
               

               
               1-317, gnl|Hg17|chr1 (18817483-18817808)
               

               
               1-317, gnl|loxAfr1|scaffold_48915 (3042-3513)
               

               
               1-317, gnl|mm7|chr4 (139118711-139118341)
               

               
               1-317, gnl|panTro1|chr1 (19044692-19045190)
               

               
               1-317, gnl|rheMac2|chr1 (21393778-21394276)
               

               
               1-317, gnl|rn3|chr5 (158557302-158556943)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-115, - strand, RNAz p=0.998851
	155-317, - strand, RNAz p=0.904084
	202-317, - strand, RNAz p=0.989911

	1-317, gnl\|bosTau2\|chr2 (60605638-60605957)
	1-317, gnl\|canFam2\|chr2 (82711309-82710864)
	1-317, gnl\|dasNov1\|scaffold_36767 (40546-40142)
	1-317, gnl\|echTel1\|scaffold_237952 (3300-2884)
	1-317, gnl\|hg17\|chr1 (18817273-18817771)
	1-317, gnl\|Hg17\|chr1 (18817483-18817808)
	1-317, gnl\|loxAfr1\|scaffold_48915 (3042-3513)
	1-317, gnl\|mm7\|chr4 (139118711-139118341)
	1-317, gnl\|panTro1\|chr1 (19044692-19045190)
	1-317, gnl\|rheMac2\|chr1 (21393778-21394276)
	1-317, gnl\|rn3\|chr5 (158557302-158556943)