Non-Coding RNA Search

rnep31c_k3.y1

Sequence:


               
               GTGCGCATGGGGAAGGCCCTGGACAACATCTGCTTCTGGGCGGCTCTGGTGCTCTTCCTC
GTCGGTTCCAGCCTCATCTTCCTCGGGGCCTACTTCAACCAAGTGCCCAAACTGCCCTAC
CCGCCGTGTATGTAGCCCTGAGGCCCCGCGGTAGGCACTGACAGACGTTCCCACTCATCT
CCAGGAGGAAAGATTTTGAAAAACGAGCTGCTCCCACTGCTGATGCTAAATCTGTACTCT
GTGAGCTTCGGGAGAGGAGTCTTGTGTGCACGTGTATGTAGGTCTGGCCATCGGCAGGGA
TCAGGAGGAGCCGGCAGAGGGTTCAGGCAACCTCTTGCATGTGAATCTTGCAAAAAGTAA
GAACTGCCCTCACTTCGGTCTTGCGGACCTCCCAGTTTTCCTTGGGCCCCAGCCCCATGT
GATCCTCTAGCCCTGTGAGTATCTACGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCGCATGGGGAAGGCCCTGGACAACATCTGCTTCTGGGCGGCTCTGGTGCTCTTCCTC
GTCGGTTCCAGCCTCATCTTCCTCGGGGCCTACTTCAACCAAGTGCCCAAACTGCCCTAC
CCGCCGTGTATGTAGCCCTGAGGCCCCGCGGTAGGCACTGACAGACGTTCCCACTCATCT
CCAGGAGGAAAGATTTTGAAAAACGAGCTGCTCCCACTGCTGATGCTAAATCTGTACTCT
GTGAGCTTCGGGAGAGGAGTCTTGTGTGCACGTGTATGTAGGTCTGGCCATCGGCAGGGA
TCAGGAGGAGCCGGCAGAGGGTTCAGGCAACCTCTTGCATGTGAATCTTGCAAAAAGTAA
GAACTGCCCTCACTTCGGTCTTGCGGACCTCCCAGTTTTCCTTGGGCCCCAGCCCCATGT
GATCCTCTAGCCCTGTGAGTATCTACGAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8MI43_CALJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8MI43_CALJA

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-221, gnl|bosTau2|chr19 (14797467-14797253)
               

               
               1-221, gnl|canFam2|chr5 (34703578-34703937)
               

               
               1-221, gnl|echTel1|scaffold_298652 (100782-100420)
               

               
               1-221, gnl|Hg17|chr17 (4742950-4742736)
               

               
               1-221, gnl|hg17|chr18 (65287891-65288281)
               

               
               1-221, gnl|loxAfr1|scaffold_9798 (67055-66689)
               

               
               1-221, gnl|mm7|chr11 (70696859-70696495)
               

               
               1-221, gnl|Mm7|chr11 (70696687-70696491)
               

               
               1-221, gnl|panTro1|chr17 (62256969-62257359)
               

               
               1-221, gnl|rheMac2|chr18 (63039445-63039833)
               

               
               1-221, gnl|rn3|chr10 (57511217-57510853)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr19 (14797467-14797253)
               

               
               1-221, gnl|canFam2|chr5 (34703578-34703937)
               

               
               1-221, gnl|echTel1|scaffold_298652 (100782-100420)
               

               
               1-221, gnl|Hg17|chr17 (4742950-4742736)
               

               
               1-221, gnl|hg17|chr18 (65287891-65288281)
               

               
               1-221, gnl|loxAfr1|scaffold_9798 (67055-66689)
               

               
               1-221, gnl|mm7|chr11 (70696859-70696495)
               

               
               1-221, gnl|Mm7|chr11 (70696687-70696491)
               

               
               1-221, gnl|panTro1|chr17 (62256969-62257359)
               

               
               1-221, gnl|rheMac2|chr18 (63039445-63039833)
               

               
               1-221, gnl|rn3|chr10 (57511217-57510853)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-221, gnl\|bosTau2\|chr19 (14797467-14797253)
	1-221, gnl\|canFam2\|chr5 (34703578-34703937)
	1-221, gnl\|echTel1\|scaffold_298652 (100782-100420)
	1-221, gnl\|Hg17\|chr17 (4742950-4742736)
	1-221, gnl\|hg17\|chr18 (65287891-65288281)
	1-221, gnl\|loxAfr1\|scaffold_9798 (67055-66689)
	1-221, gnl\|mm7\|chr11 (70696859-70696495)
	1-221, gnl\|Mm7\|chr11 (70696687-70696491)
	1-221, gnl\|panTro1\|chr17 (62256969-62257359)
	1-221, gnl\|rheMac2\|chr18 (63039445-63039833)
	1-221, gnl\|rn3\|chr10 (57511217-57510853)