Non-Coding RNA Search

rnep32c_m16.y1

Sequence:


               
               GTTCCCGGGGGAACCTTGGGGTCCATAGCCTGCCCCTCAAGAGGTACTCTTGCTGGCAGT
GACCTGCCTGGGCAAAGAGGAGACCAAAGAGGTGCCGTGGGCTGGTAGTCTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCCGGGGGAACCTTGGGGTCCATAGCCTGCCCCTCAAGAGGTACTCTTGCTGGCAGT
GACCTGCCTGGGCAAAGAGGAGACCAAAGAGGTGCCGTGGGCTGGTAGTCTGGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               10-115, - strand, RNAz p=0.884458

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-115, - strand, RNAz p=0.884458

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-115, gnl|bosTau2|chr2 (84606588-84606474)
               

               
               1-115, gnl|canFam2|chr2 (79845081-79844556)
               

               
               1-115, gnl|echTel1|scaffold_281470 (39821-40389)
               

               
               1-115, gnl|hg17|chr1 (22385200-22385766)
               

               
               1-115, gnl|Hg17|chr1 (22385257-22385376)
               

               
               1-115, gnl|loxAfr1|scaffold_72844 (9636-10197)
               

               
               1-115, gnl|mm7|chr4 (136525349-136524807)
               

               
               1-115, gnl|Mm7|chr4 (136525292-136525177)
               

               
               1-115, gnl|oryCun1|scaffold_172241 (382-918)
               

               
               1-115, gnl|panTro1|chr1 (22741527-22742090)
               

               
               1-115, gnl|rheMac2|chr1 (24902027-24902590)
               

               
               1-115, gnl|rn3|chr5 (155926085-155925536)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-115, gnl|bosTau2|chr2 (84606588-84606474)
               

               
               1-115, gnl|canFam2|chr2 (79845081-79844556)
               

               
               1-115, gnl|echTel1|scaffold_281470 (39821-40389)
               

               
               1-115, gnl|hg17|chr1 (22385200-22385766)
               

               
               1-115, gnl|Hg17|chr1 (22385257-22385376)
               

               
               1-115, gnl|loxAfr1|scaffold_72844 (9636-10197)
               

               
               1-115, gnl|mm7|chr4 (136525349-136524807)
               

               
               1-115, gnl|Mm7|chr4 (136525292-136525177)
               

               
               1-115, gnl|oryCun1|scaffold_172241 (382-918)
               

               
               1-115, gnl|panTro1|chr1 (22741527-22742090)
               

               
               1-115, gnl|rheMac2|chr1 (24902027-24902590)
               

               
               1-115, gnl|rn3|chr5 (155926085-155925536)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-115, gnl\|bosTau2\|chr2 (84606588-84606474)
	1-115, gnl\|canFam2\|chr2 (79845081-79844556)
	1-115, gnl\|echTel1\|scaffold_281470 (39821-40389)
	1-115, gnl\|hg17\|chr1 (22385200-22385766)
	1-115, gnl\|Hg17\|chr1 (22385257-22385376)
	1-115, gnl\|loxAfr1\|scaffold_72844 (9636-10197)
	1-115, gnl\|mm7\|chr4 (136525349-136524807)
	1-115, gnl\|Mm7\|chr4 (136525292-136525177)
	1-115, gnl\|oryCun1\|scaffold_172241 (382-918)
	1-115, gnl\|panTro1\|chr1 (22741527-22742090)
	1-115, gnl\|rheMac2\|chr1 (24902027-24902590)
	1-115, gnl\|rn3\|chr5 (155926085-155925536)