Non-Coding RNA Search

rnje02c_l14.y1

Sequence:


               
               GCAGCCACAGAACAGCCAGAGGAGGCTCCACAGGAGTCAGAGTTAGAACCCTAGGGCTGG
CAGCTGATGGAGCAGGAGGAGGAATCTGATCCGTCTGCGGCCTTGAAGCAACACCACCAG
GAAGACACCCCTGCCTGGGAACAGAACAAGGTCTCCTGGACAAGTCTGCCCCCGCCTCCC
CGCCAGTGCCCCAGGCGGGTGCTAAGCCTGTGTGTGGGATATGCTACTTGTGCATATGTT
AGATTTTCTTCTAATAAAGTGTGCAGTTTTCTTTCCTTTACTGTGAACTAACTGCAGATG
CAAATACGTTGGAAATTATTCTTGCCCTTTTTCTGCCCAAGAAGGCAGACAATCAGGGGT
ATATAATCCAAGCTATTTGGTCTCAAACAAATGAATTAAATATTTTGACTTGTTGAATAA
AAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCCACAGAACAGCCAGAGGAGGCTCCACAGGAGTCAGAGTTAGAACCCTAGGGCTGG
CAGCTGATGGAGCAGGAGGAGGAATCTGATCCGTCTGCGGCCTTGAAGCAACACCACCAG
GAAGACACCCCTGCCTGGGAACAGAACAAGGTCTCCTGGACAAGTCTGCCCCCGCCTCCC
CGCCAGTGCCCCAGGCGGGTGCTAAGCCTGTGTGTGGGATATGCTACTTGTGCATATGTT
AGATTTTCTTCTAATAAAGTGTGCAGTTTTCTTTCCTTTACTGTGAACTAACTGCAGATG
CAAATACGTTGGAAATTATTCTTGCCCTTTTTCTGCCCAAGAAGGCAGACAATCAGGGGT
ATATAATCCAAGCTATTTGGTCTCAAACAAATGAATTAAATATTTTGACTTGTTGAATAA
AAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-421, - strand, RNAz p=0.751747

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-421, - strand, RNAz p=0.751747

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               241-421, gnl|bosTau2|chr8 (3119047-3119227)
               

               
               241-421, gnl|canFam2|chr25 (26852827-26853201)
               

               
               241-421, gnl|dasNov1|scaffold_42153 (4591-4937)
               

               
               241-421, gnl|echTel1|scaffold_289217 (2746-2369)
               

               
               241-421, gnl|hg17|chr4 (174549745-174550098)
               

               
               241-421, gnl|Hg17|chr4 (174549744-174549907)
               

               
               241-421, gnl|loxAfr1|scaffold_1776 (88353-87988)
               

               
               241-421, gnl|mm7|chr8 (55961588-55961228)
               

               
               241-421, gnl|Mm7|chr8 (55961581-55961414)
               

               
               241-421, gnl|panTro1|chr3 (192497629-192497982)
               

               
               241-421, gnl|rheMac2|chr5 (165306306-165306659)
               

               
               241-421, gnl|rn3|chr16 (36068709-36069059)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               241-421, gnl|bosTau2|chr8 (3119047-3119227)
               

               
               241-421, gnl|canFam2|chr25 (26852827-26853201)
               

               
               241-421, gnl|dasNov1|scaffold_42153 (4591-4937)
               

               
               241-421, gnl|echTel1|scaffold_289217 (2746-2369)
               

               
               241-421, gnl|hg17|chr4 (174549745-174550098)
               

               
               241-421, gnl|Hg17|chr4 (174549744-174549907)
               

               
               241-421, gnl|loxAfr1|scaffold_1776 (88353-87988)
               

               
               241-421, gnl|mm7|chr8 (55961588-55961228)
               

               
               241-421, gnl|Mm7|chr8 (55961581-55961414)
               

               
               241-421, gnl|panTro1|chr3 (192497629-192497982)
               

               
               241-421, gnl|rheMac2|chr5 (165306306-165306659)
               

               
               241-421, gnl|rn3|chr16 (36068709-36069059)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	241-421, gnl\|bosTau2\|chr8 (3119047-3119227)
	241-421, gnl\|canFam2\|chr25 (26852827-26853201)
	241-421, gnl\|dasNov1\|scaffold_42153 (4591-4937)
	241-421, gnl\|echTel1\|scaffold_289217 (2746-2369)
	241-421, gnl\|hg17\|chr4 (174549745-174550098)
	241-421, gnl\|Hg17\|chr4 (174549744-174549907)
	241-421, gnl\|loxAfr1\|scaffold_1776 (88353-87988)
	241-421, gnl\|mm7\|chr8 (55961588-55961228)
	241-421, gnl\|Mm7\|chr8 (55961581-55961414)
	241-421, gnl\|panTro1\|chr3 (192497629-192497982)
	241-421, gnl\|rheMac2\|chr5 (165306306-165306659)
	241-421, gnl\|rn3\|chr16 (36068709-36069059)