Non-Coding RNA Search

rnje04c_j4.y1

Sequence:


               
               CTAGGGGACAGCTACAGCCCTCCCACAGGGACTGCCTCTCCCCCTGAGGGGCCCCTGAAC
TATGAGGCCTATGAGGGTGAGGAAGAAGAGGAGGAGCTGGTCTACCCCCAGACCTACGGG
CTGACGCAGGGCGGCGGACCCCCGCTGTCTCCAGAGGAGCTGGGCTCAGATGAGGACGCC
ATCGATCCTGACCTGATGGCCTACCTGAGTTCCCTGCACCAGGACGCCCTGGCGCCAGGC
CTGGATGGCCAGGACAAGCTAGTGCGCAAACGCCGCTCCCAGATGCCCCAGGAGTGCCCG
GTCTGCCACAAGATCATCCACGGGGCGGGCAAGCTGCCGCGCCACATGAGGACCCATACG
GGTGAGAAGCCCTTTGCCTGTGAAGTGTGCGGCGTCCGTTTCACCCGGAATGACAAGCTG
AAGATCCACATGCGGAAGCACACAGGAGAGCGCCCCTACTCCTGCCCGCACTGCCCAGCC
CGCTTCCTGCACAGCTACGACCTCAAGAACCACATGCACCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGGGGACAGCTACAGCCCTCCCACAGGGACTGCCTCTCCCCCTGAGGGGCCCCTGAAC
TATGAGGCCTATGAGGGTGAGGAAGAAGAGGAGGAGCTGGTCTACCCCCAGACCTACGGG
CTGACGCAGGGCGGCGGACCCCCGCTGTCTCCAGAGGAGCTGGGCTCAGATGAGGACGCC
ATCGATCCTGACCTGATGGCCTACCTGAGTTCCCTGCACCAGGACGCCCTGGCGCCAGGC
CTGGATGGCCAGGACAAGCTAGTGCGCAAACGCCGCTCCCAGATGCCCCAGGAGTGCCCG
GTCTGCCACAAGATCATCCACGGGGCGGGCAAGCTGCCGCGCCACATGAGGACCCATACG
GGTGAGAAGCCCTTTGCCTGTGAAGTGTGCGGCGTCCGTTTCACCCGGAATGACAAGCTG
AAGATCCACATGCGGAAGCACACAGGAGAGCGCCCCTACTCCTGCCCGCACTGCCCAGCC
CGCTTCCTGCACAGCTACGACCTCAAGAACCACATGCACCTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-279, - strand, RNAz p=0.983555

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-279, - strand, RNAz p=0.983555

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               1-126, - strand, RNAmicro p=0.999943

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1-126, - strand, RNAmicro p=0.999943

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-408, gnl|bosTau2|chr3 (9094420-9094827)
               

               
               1-408, gnl|Hg17|chr1 (151800957-151801364)
               

               
               1-408, gnl|Mm7|chr3 (89507414-89507007)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-408, gnl|bosTau2|chr3 (9094420-9094827)
               

               
               1-408, gnl|Hg17|chr1 (151800957-151801364)
               

               
               1-408, gnl|Mm7|chr3 (89507414-89507007)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nje (0.16592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-408, gnl\|bosTau2\|chr3 (9094420-9094827)
	1-408, gnl\|Hg17\|chr1 (151800957-151801364)
	1-408, gnl\|Mm7\|chr3 (89507414-89507007)