Non-Coding RNA Search

rnje12c_e3.y1

Sequence:


               
               CCCAGCTCCGTCAGCTTTAAGTCCGCTGAGAAGAAAATAATGGACGTGCTGAAGGCGGAG
GAAGCCAGGCTGCAGCTGGCCCACGCCACCATGACCAAGAGCCAGAAGCTGCTGCTGACC
GTCCAGACCGGCATCGACAACCTCTACATCCGCCTGATTGGCATCCCCCTGCCCACGGCC
CAGAAAGAAGCGCTGCCCTCCGATGCCCTCGATGTGTACGGCAAGCTGGCGTACTGCGAG
CGGAAGCTGCTGCACCTGGCCGACGGTGTGCAGGCGCTGTCCAGGACGGAGGAGGTCGAC
ACGAAGGTGAGGGACGCCCTGGAGGCCTCCACCCTGAAGGAGAAGCAGAACACCAGGATC
CGCTTTGAGGACCTGGAGGAGGACGTCATAGAGACCTTCCAGTTCGCCGACGTGGACCAC
AGCTACGTGCCCTCGCGGGCCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGCTCCGTCAGCTTTAAGTCCGCTGAGAAGAAAATAATGGACGTGCTGAAGGCGGAG
GAAGCCAGGCTGCAGCTGGCCCACGCCACCATGACCAAGAGCCAGAAGCTGCTGCTGACC
GTCCAGACCGGCATCGACAACCTCTACATCCGCCTGATTGGCATCCCCCTGCCCACGGCC
CAGAAAGAAGCGCTGCCCTCCGATGCCCTCGATGTGTACGGCAAGCTGGCGTACTGCGAG
CGGAAGCTGCTGCACCTGGCCGACGGTGTGCAGGCGCTGTCCAGGACGGAGGAGGTCGAC
ACGAAGGTGAGGGACGCCCTGGAGGCCTCCACCCTGAAGGAGAAGCAGAACACCAGGATC
CGCTTTGAGGACCTGGAGGAGGACGTCATAGAGACCTTCCAGTTCGCCGACGTGGACCAC
AGCTACGTGCCCTCGCGGGCCGAG

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               12-197, gnl|bosTau2|chr11 (86191465-86191650)
               

               
               12-197, gnl|canFam2|chr9 (52102408-52102227)
               

               
               12-197, gnl|dasNov1|scaffold_38731 (11628-11813)
               

               
               12-197, gnl|echTel1|scaffold_212065 (1543-1358)
               

               
               12-197, gnl|hg17|chr9 (136976782-136976967)
               

               
               12-197, gnl|Hg17|chr9 (136976790-136976973)
               

               
               12-197, gnl|loxAfr1|scaffold_134967 (1181-1365)
               

               
               12-197, gnl|mm7|chr2 (25617119-25616932)
               

               
               12-197, gnl|Mm7|chr2 (25617107-25616924)
               

               
               12-197, gnl|monDom2|scaffold_1 (188682834-188682652)
               

               
               12-197, gnl|panTro1|chr11 (121738901-121739086)
               

               
               12-197, gnl|rheMac2|chr15 (1452317-1452132)
               

               
               12-197, gnl|rn3|chr3 (3782102-3781915)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-197, gnl|bosTau2|chr11 (86191465-86191650)
               

               
               12-197, gnl|canFam2|chr9 (52102408-52102227)
               

               
               12-197, gnl|dasNov1|scaffold_38731 (11628-11813)
               

               
               12-197, gnl|echTel1|scaffold_212065 (1543-1358)
               

               
               12-197, gnl|hg17|chr9 (136976782-136976967)
               

               
               12-197, gnl|Hg17|chr9 (136976790-136976973)
               

               
               12-197, gnl|loxAfr1|scaffold_134967 (1181-1365)
               

               
               12-197, gnl|mm7|chr2 (25617119-25616932)
               

               
               12-197, gnl|Mm7|chr2 (25617107-25616924)
               

               
               12-197, gnl|monDom2|scaffold_1 (188682834-188682652)
               

               
               12-197, gnl|panTro1|chr11 (121738901-121739086)
               

               
               12-197, gnl|rheMac2|chr15 (1452317-1452132)
               

               
               12-197, gnl|rn3|chr3 (3782102-3781915)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nje (0.16592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	12-197, gnl\|bosTau2\|chr11 (86191465-86191650)
	12-197, gnl\|canFam2\|chr9 (52102408-52102227)
	12-197, gnl\|dasNov1\|scaffold_38731 (11628-11813)
	12-197, gnl\|echTel1\|scaffold_212065 (1543-1358)
	12-197, gnl\|hg17\|chr9 (136976782-136976967)
	12-197, gnl\|Hg17\|chr9 (136976790-136976973)
	12-197, gnl\|loxAfr1\|scaffold_134967 (1181-1365)
	12-197, gnl\|mm7\|chr2 (25617119-25616932)
	12-197, gnl\|Mm7\|chr2 (25617107-25616924)
	12-197, gnl\|monDom2\|scaffold_1 (188682834-188682652)
	12-197, gnl\|panTro1\|chr11 (121738901-121739086)
	12-197, gnl\|rheMac2\|chr15 (1452317-1452132)
	12-197, gnl\|rn3\|chr3 (3782102-3781915)