rnje16c_g18.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCATCTTCGCTGTCAGCTACATTGTCATTTTCCTGTACATCTCCCTGGCCCTGGGCACC TACTCCAGCTGGCGCCGAGTGCTGGTGGACTCCAAGGCCACGCTGGGCCTGGGCGGGGTG GTCGTGGTGCTGGGAGCAGTCATGGCCTCCATGGGCTTCTTCGCCTACCTTGGTGTCCCC TCCTCTCTGGTGATCCTTCAAGTGGTGCCTTTCCTGGTGCTCGCCGTGGGGGCCGACAAC ATCTTCATCTTCGTTCTTGAGTACCAGAGGCTGCCTCGAAACCCTGGGGAGCAACGAGAG GCCCACATCGGCCGAGCCCTGGGCAGAGTGGCCCCGAGCATGCTGCTCTGCAGCCTCTCC GAGGCCATCTGCTTCTTCCTAGGAGCCCTGACCCCCATGCCGGCAGTGCGGACCTTTGCC CTGATCTCTGGCCTGGCGGTGCTTCTCGACTTCCTGCTGCAGATGTCGGCCTTCGTGGCC CTGCTCTCCCTGGACAGCAGGAGGCAGGAGGCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCATCTTCGCTGTCAGCTACATTGTCATTTTCCTGTACATCTCCCTGGCCCTGGGCACC TACTCCAGCTGGCGCCGAGTGCTGGTGGACTCCAAGGCCACGCTGGGCCTGGGCGGGGTG GTCGTGGTGCTGGGAGCAGTCATGGCCTCCATGGGCTTCTTCGCCTACCTTGGTGTCCCC TCCTCTCTGGTGATCCTTCAAGTGGTGCCTTTCCTGGTGCTCGCCGTGGGGGCCGACAAC ATCTTCATCTTCGTTCTTGAGTACCAGAGGCTGCCTCGAAACCCTGGGGAGCAACGAGAG GCCCACATCGGCCGAGCCCTGGGCAGAGTGGCCCCGAGCATGCTGCTCTGCAGCCTCTCC GAGGCCATCTGCTTCTTCCTAGGAGCCCTGACCCCCATGCCGGCAGTGCGGACCTTTGCC CTGATCTCTGGCCTGGCGGTGCTTCTCGACTTCCTGCTGCAGATGTCGGCCTTCGTGGCC CTGCTCTCCCTGGACAGCAGGAGGCAGGAGGCCTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 393-511, - strand, RNAz p=0.603173 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 393-511, - strand, RNAz p=0.603173 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 75-267, gnl|bosTau2|chr4 (42911869-42911677) | |
| 75-267, gnl|canFam2|chr7 (67826490-67826303) | |
| 75-267, gnl|danRer3|chr14 (50650411-50650617) | |
| 75-267, gnl|echTel1|scaffold_227557 (9611-9828) | |
| 75-267, gnl|fr1|chrUn (198305536-198305738) | |
| 75-267, gnl|hg17|chr7 (44347277-44347492) | |
| 75-267, gnl|Hg17|chr7 (44347478-44347286) | |
| 75-267, gnl|loxAfr1|scaffold_32668 (1541-1757) | |
| 75-267, gnl|mm7|chr11 (6176132-6176345) | |
| 75-267, gnl|Mm7|chr11 (6176343-6176141) | |
| 75-267, gnl|monDom2|scaffold_1 (155236157-155235961) | |
| 75-267, gnl|oryCun1|scaffold_189027 (850-1064) | |
| 75-267, gnl|rheMac2|chr3 (81803147-81802932) | |
| 75-267, gnl|rn3|chr18 (3736655-3736838) | |
| 75-267, gnl|tetNig1|chrUn_random (33456230-33456429) | |
| 75-267, gnl|xenTro1|scaffold_217 (1334821-1334617) | |
| 378-511, gnl|bosTau2|chr4 (42910331-42910198) | |
| 378-511, gnl|canFam2|chr7 (67829785-67829636) | |
| 378-511, gnl|danRer3|chr14 (50646160-50646302) | |
| 378-511, gnl|dasNov1|scaffold_132341 (5232-5384) | |
| 378-511, gnl|echTel1|scaffold_227557 (8475-8643) | |
| 378-511, gnl|fr1|chrUn (198305095-198305228) | |
| 378-511, gnl|hg17|chr7 (44346262-44346432) | |
| 378-511, gnl|Hg17|chr7 (44346403-44346269) | |
| 378-511, gnl|loxAfr1|scaffold_32668 (160-327) | |
| 378-511, gnl|mm7|chr11 (6175024-6175193) | |
| 378-511, gnl|Mm7|chr11 (6175164-6175031) | |
| 378-511, gnl|monDom2|scaffold_1 (155240441-155240295) | |
| 378-511, gnl|oryCun1|scaffold_189027 (90-259) | |
| 378-511, gnl|panTro1|chr6 (45860097-45860267) | |
| 378-511, gnl|rheMac2|chr3 (81804159-81803989) | |
| 378-511, gnl|rn3|chr18 (3734656-3734827) | |
| 378-511, gnl|tetNig1|chrUn_random (33455751-33455879) | |
| 378-511, gnl|xenTro1|scaffold_217 (1335338-1335158) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-267, gnl|bosTau2|chr4 (42911869-42911677) | |
| 75-267, gnl|canFam2|chr7 (67826490-67826303) | |
| 75-267, gnl|danRer3|chr14 (50650411-50650617) | |
| 75-267, gnl|echTel1|scaffold_227557 (9611-9828) | |
| 75-267, gnl|fr1|chrUn (198305536-198305738) | |
| 75-267, gnl|hg17|chr7 (44347277-44347492) | |
| 75-267, gnl|Hg17|chr7 (44347478-44347286) | |
| 75-267, gnl|loxAfr1|scaffold_32668 (1541-1757) | |
| 75-267, gnl|mm7|chr11 (6176132-6176345) | |
| 75-267, gnl|Mm7|chr11 (6176343-6176141) | |
| 75-267, gnl|monDom2|scaffold_1 (155236157-155235961) | |
| 75-267, gnl|oryCun1|scaffold_189027 (850-1064) | |
| 75-267, gnl|rheMac2|chr3 (81803147-81802932) | |
| 75-267, gnl|rn3|chr18 (3736655-3736838) | |
| 75-267, gnl|tetNig1|chrUn_random (33456230-33456429) | |
| 75-267, gnl|xenTro1|scaffold_217 (1334821-1334617) | |
| 378-511, gnl|bosTau2|chr4 (42910331-42910198) | |
| 378-511, gnl|canFam2|chr7 (67829785-67829636) | |
| 378-511, gnl|danRer3|chr14 (50646160-50646302) | |
| 378-511, gnl|dasNov1|scaffold_132341 (5232-5384) | |
| 378-511, gnl|echTel1|scaffold_227557 (8475-8643) | |
| 378-511, gnl|fr1|chrUn (198305095-198305228) | |
| 378-511, gnl|hg17|chr7 (44346262-44346432) | |
| 378-511, gnl|Hg17|chr7 (44346403-44346269) | |
| 378-511, gnl|loxAfr1|scaffold_32668 (160-327) | |
| 378-511, gnl|mm7|chr11 (6175024-6175193) | |
| 378-511, gnl|Mm7|chr11 (6175164-6175031) | |
| 378-511, gnl|monDom2|scaffold_1 (155240441-155240295) | |
| 378-511, gnl|oryCun1|scaffold_189027 (90-259) | |
| 378-511, gnl|panTro1|chr6 (45860097-45860267) | |
| 378-511, gnl|rheMac2|chr3 (81804159-81803989) | |
| 378-511, gnl|rn3|chr18 (3734656-3734827) | |
| 378-511, gnl|tetNig1|chrUn_random (33455751-33455879) | |
| 378-511, gnl|xenTro1|scaffold_217 (1335338-1335158) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |