Non-Coding RNA Search

rnje16c_i7.y1

Sequence:


               
               CCGTGATTGTACTCGGAGCTGGAGACACAGCTTTCGACTGTGCAACATCCGCTTTACGTT
GTGGAGCCCGCCGAGTGTTCCTCGTCTTCAGAAAAGGCTTGGTTAATATAAGAGCTGTCC
CTGAGGAGGTGGAGCTTGCTAAGGAAGAAAAATGTGAATTTTTGCCTTTCCTGTCCCCAC
GGAAGGTTATAGTTAAAGGTGGGAGAATTGTTGCCGTGCAATTTGTTCGAACAGAACAAG
ATGAAACTGGAAAATGGAATGAAGATGAAGATCAGATAGTCCATCTGAAGGCTGATGTGG
TCATCAGTGCCTTGGGCTCAGTGCTGAGGGATCCTAAAGTAAAAGAAGCCTTGAGCCCTA
TAAAATTTAACAGATGGGATCTCCCAGAAGTAGATCCAGAAACTATGCAAACCAGTGAAC
CATGGGTGTTTGCAGGTGGTGATATCGTGGGTATGGCTAACACTACGGTGGAATCCGTAA
ATGACGGAAAGCAGGCCTCCTGGTACATTCACAAATATATCCAGGCCCAATATGGAGCTT
CAGTTTCTGCCAAGCCCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTGATTGTACTCGGAGCTGGAGACACAGCTTTCGACTGTGCAACATCCGCTTTACGTT
GTGGAGCCCGCCGAGTGTTCCTCGTCTTCAGAAAAGGCTTGGTTAATATAAGAGCTGTCC
CTGAGGAGGTGGAGCTTGCTAAGGAAGAAAAATGTGAATTTTTGCCTTTCCTGTCCCCAC
GGAAGGTTATAGTTAAAGGTGGGAGAATTGTTGCCGTGCAATTTGTTCGAACAGAACAAG
ATGAAACTGGAAAATGGAATGAAGATGAAGATCAGATAGTCCATCTGAAGGCTGATGTGG
TCATCAGTGCCTTGGGCTCAGTGCTGAGGGATCCTAAAGTAAAAGAAGCCTTGAGCCCTA
TAAAATTTAACAGATGGGATCTCCCAGAAGTAGATCCAGAAACTATGCAAACCAGTGAAC
CATGGGTGTTTGCAGGTGGTGATATCGTGGGTATGGCTAACACTACGGTGGAATCCGTAA
ATGACGGAAAGCAGGCCTCCTGGTACATTCACAAATATATCCAGGCCCAATATGGAGCTT
CAGTTTCTGCCAAGCCCGAA

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-130, gnl|bosTau2|chr3 (35682115-35681986)
               

               
               1-130, gnl|canFam2|chr6 (55170592-55170372)
               

               
               1-130, gnl|danRer3|chr2 (9933369-9933586)
               

               
               1-130, gnl|dasNov1|scaffold_513 (99941-100251)
               

               
               1-130, gnl|echTel1|scaffold_287086 (41877-41657)
               

               
               1-130, gnl|fr1|chrUn (328183227-328183032)
               

               
               1-130, gnl|galGal2|chr8 (13067082-13066860)
               

               
               1-130, gnl|hg17|chr1 (97770783-97771003)
               

               
               1-130, gnl|Hg17|chr1 (97770922-97770793)
               

               
               1-130, gnl|loxAfr1|scaffold_14647 (53490-53713)
               

               
               1-130, gnl|mm7|chr3 (118671777-118671557)
               

               
               1-130, gnl|Mm7|chr3 (118671636-118671765)
               

               
               1-130, gnl|monDom2|scaffold_0 (22390349-22390129)
               

               
               1-130, gnl|oryCun1|scaffold_201159 (46041-45818)
               

               
               1-130, gnl|panTro1|chr1 (96782217-96782437)
               

               
               1-130, gnl|rheMac2|chr1 (100639116-100639336)
               

               
               1-130, gnl|rn3|chr2 (215230179-215229959)
               

               
               1-130, gnl|tetNig1|chrUn_random (117864249-117864056)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-130, gnl|bosTau2|chr3 (35682115-35681986)
               

               
               1-130, gnl|canFam2|chr6 (55170592-55170372)
               

               
               1-130, gnl|danRer3|chr2 (9933369-9933586)
               

               
               1-130, gnl|dasNov1|scaffold_513 (99941-100251)
               

               
               1-130, gnl|echTel1|scaffold_287086 (41877-41657)
               

               
               1-130, gnl|fr1|chrUn (328183227-328183032)
               

               
               1-130, gnl|galGal2|chr8 (13067082-13066860)
               

               
               1-130, gnl|hg17|chr1 (97770783-97771003)
               

               
               1-130, gnl|Hg17|chr1 (97770922-97770793)
               

               
               1-130, gnl|loxAfr1|scaffold_14647 (53490-53713)
               

               
               1-130, gnl|mm7|chr3 (118671777-118671557)
               

               
               1-130, gnl|Mm7|chr3 (118671636-118671765)
               

               
               1-130, gnl|monDom2|scaffold_0 (22390349-22390129)
               

               
               1-130, gnl|oryCun1|scaffold_201159 (46041-45818)
               

               
               1-130, gnl|panTro1|chr1 (96782217-96782437)
               

               
               1-130, gnl|rheMac2|chr1 (100639116-100639336)
               

               
               1-130, gnl|rn3|chr2 (215230179-215229959)
               

               
               1-130, gnl|tetNig1|chrUn_random (117864249-117864056)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nje (0.16592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-130, gnl\|bosTau2\|chr3 (35682115-35681986)
	1-130, gnl\|canFam2\|chr6 (55170592-55170372)
	1-130, gnl\|danRer3\|chr2 (9933369-9933586)
	1-130, gnl\|dasNov1\|scaffold_513 (99941-100251)
	1-130, gnl\|echTel1\|scaffold_287086 (41877-41657)
	1-130, gnl\|fr1\|chrUn (328183227-328183032)
	1-130, gnl\|galGal2\|chr8 (13067082-13066860)
	1-130, gnl\|hg17\|chr1 (97770783-97771003)
	1-130, gnl\|Hg17\|chr1 (97770922-97770793)
	1-130, gnl\|loxAfr1\|scaffold_14647 (53490-53713)
	1-130, gnl\|mm7\|chr3 (118671777-118671557)
	1-130, gnl\|Mm7\|chr3 (118671636-118671765)
	1-130, gnl\|monDom2\|scaffold_0 (22390349-22390129)
	1-130, gnl\|oryCun1\|scaffold_201159 (46041-45818)
	1-130, gnl\|panTro1\|chr1 (96782217-96782437)
	1-130, gnl\|rheMac2\|chr1 (100639116-100639336)
	1-130, gnl\|rn3\|chr2 (215230179-215229959)
	1-130, gnl\|tetNig1\|chrUn_random (117864249-117864056)