Non-Coding RNA Search

rnje19c_o20.y1

Sequence:


               
               GCTGCCTGGCCAATTCTGTTCCTCTTTTGGATGATGTCACCTCCTCTGTGAGGCCTGCCC
AGACTCCTTTGGTGCTGAGTTGCTTCCTCCTTAGTGCTCCCACAGCACCCTGCCTGTGTC
CCTACGTGCTGGATTGTGATTGCCTGCTTGGACCGCCTCCGGGGCCAGGGCCGGGCTGGG
ACTCCGCCTGTAATCCCTGGCCCCGTGCTACCCAGCACTGTGCCAGTGGGAGCCAGCAGG
GCTGGGGGATGAGTCACGCAGCTCCGTGTCCTCCCAGAGTGAGCTGCAGTCTCGCTCTCT
TCCGGCTTGTAAAGGCAGCTCTTTCCCGAGAAGCTGACTCTCTTCTGCAGAACGCAGGGC
TGCTCTGGGGAAACCCTCCTCCACTTACCCCTGGATTTTGCACACCCCGGCCCCAAACCC
CAGGAGACCTCTGGATCAAATGTGCCGAGCCCACACCCCTTCCTCTGCCTCTTGCATGCC
GGTCCCAGTGGCTTGGCTTGCCAGCTTCCTTCCTGGAGCCTTCCTGCTCTCCTGCCATCT
GCCTTCACCTGGCCAGCCTGGGCGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCCTGGCCAATTCTGTTCCTCTTTTGGATGATGTCACCTCCTCTGTGAGGCCTGCCC
AGACTCCTTTGGTGCTGAGTTGCTTCCTCCTTAGTGCTCCCACAGCACCCTGCCTGTGTC
CCTACGTGCTGGATTGTGATTGCCTGCTTGGACCGCCTCCGGGGCCAGGGCCGGGCTGGG
ACTCCGCCTGTAATCCCTGGCCCCGTGCTACCCAGCACTGTGCCAGTGGGAGCCAGCAGG
GCTGGGGGATGAGTCACGCAGCTCCGTGTCCTCCCAGAGTGAGCTGCAGTCTCGCTCTCT
TCCGGCTTGTAAAGGCAGCTCTTTCCCGAGAAGCTGACTCTCTTCTGCAGAACGCAGGGC
TGCTCTGGGGAAACCCTCCTCCACTTACCCCTGGATTTTGCACACCCCGGCCCCAAACCC
CAGGAGACCTCTGGATCAAATGTGCCGAGCCCACACCCCTTCCTCTGCCTCTTGCATGCC
GGTCCCAGTGGCTTGGCTTGCCAGCTTCCTTCCTGGAGCCTTCCTGCTCTCCTGCCATCT
GCCTTCACCTGGCCAGCCTGGGCGGGGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.626081
               

               
               316-474, - strand, RNAz p=0.999397

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.626081
               

               
               316-474, - strand, RNAz p=0.999397

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-541, gnl|bosTau2|chr3 (75867232-75867755)
               

               
               1-541, gnl|Hg17|chr1 (37606823-37606285)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-541, gnl|bosTau2|chr3 (75867232-75867755)
               

               
               1-541, gnl|Hg17|chr1 (37606823-37606285)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-119, - strand, RNAz p=0.626081
	316-474, - strand, RNAz p=0.999397

	1-541, gnl\|bosTau2\|chr3 (75867232-75867755)
	1-541, gnl\|Hg17\|chr1 (37606823-37606285)