Non-Coding RNA Search

rnje21c_a12.y1

Sequence:


               
               CAGCACCCCCACAGCCACCAGTGCCCCAGCTCCCCGAGGGCGAGGCCTCCCGCTGCCTGT
TCCTGCTGGCTCCTGGGCCCCGGGACGGCGAGAAGGTGCCCAATCGGGACAGCGGCATTG
ATAGCATCAGCTCACCATCCAACAGCGAGGAGACCTGCTTCGTCAGTGATGATGGGCCCC
CCAGCCACAGCCTCTGCCCTGGGCCCCCTGCCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCACCCCCACAGCCACCAGTGCCCCAGCTCCCCGAGGGCGAGGCCTCCCGCTGCCTGT
TCCTGCTGGCTCCTGGGCCCCGGGACGGCGAGAAGGTGCCCAATCGGGACAGCGGCATTG
ATAGCATCAGCTCACCATCCAACAGCGAGGAGACCTGCTTCGTCAGTGATGATGGGCCCC
CCAGCCACAGCCTCTGCCCTGGGCCCCCTGCCCTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               51-164, - strand, RNAz p=0.955511

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-164, - strand, RNAz p=0.955511

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               4-216, gnl|bosTau2|chrX (26553478-26553690)
               

               
               4-216, gnl|canFam2|chrX (46189234-46189419)
               

               
               4-216, gnl|danRer3|chr3 (2595512-2595685)
               

               
               4-216, gnl|dasNov1|scaffold_150672 (4619-4804)
               

               
               4-216, gnl|echTel1|scaffold_285081 (30402-30217)
               

               
               4-216, gnl|fr1|chrUn (72981777-72981598)
               

               
               4-216, gnl|hg17|chrX (54379618-54379803)
               

               
               4-216, gnl|Hg17|chrX (54379831-54379619)
               

               
               4-216, gnl|mm7|chrX (145825983-145825798)
               

               
               4-216, gnl|Mm7|chrX (145825768-145825980)
               

               
               4-216, gnl|monDom2|scaffold_255 (266088-266254)
               

               
               4-216, gnl|oryCun1|scaffold_100277 (8988-8803)
               

               
               4-216, gnl|panTro1|chrX (55641078-55641263)
               

               
               4-216, gnl|rheMac2|chrX (52790289-52790474)
               

               
               4-216, gnl|rn3|chrX (40439603-40439418)
               

               
               4-216, gnl|tetNig1|chrUn_random (90468500-90468679)
               

               
               4-216, gnl|xenTro1|scaffold_750 (369622-369413)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-216, gnl|bosTau2|chrX (26553478-26553690)
               

               
               4-216, gnl|canFam2|chrX (46189234-46189419)
               

               
               4-216, gnl|danRer3|chr3 (2595512-2595685)
               

               
               4-216, gnl|dasNov1|scaffold_150672 (4619-4804)
               

               
               4-216, gnl|echTel1|scaffold_285081 (30402-30217)
               

               
               4-216, gnl|fr1|chrUn (72981777-72981598)
               

               
               4-216, gnl|hg17|chrX (54379618-54379803)
               

               
               4-216, gnl|Hg17|chrX (54379831-54379619)
               

               
               4-216, gnl|mm7|chrX (145825983-145825798)
               

               
               4-216, gnl|Mm7|chrX (145825768-145825980)
               

               
               4-216, gnl|monDom2|scaffold_255 (266088-266254)
               

               
               4-216, gnl|oryCun1|scaffold_100277 (8988-8803)
               

               
               4-216, gnl|panTro1|chrX (55641078-55641263)
               

               
               4-216, gnl|rheMac2|chrX (52790289-52790474)
               

               
               4-216, gnl|rn3|chrX (40439603-40439418)
               

               
               4-216, gnl|tetNig1|chrUn_random (90468500-90468679)
               

               
               4-216, gnl|xenTro1|scaffold_750 (369622-369413)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	4-216, gnl\|bosTau2\|chrX (26553478-26553690)
	4-216, gnl\|canFam2\|chrX (46189234-46189419)
	4-216, gnl\|danRer3\|chr3 (2595512-2595685)
	4-216, gnl\|dasNov1\|scaffold_150672 (4619-4804)
	4-216, gnl\|echTel1\|scaffold_285081 (30402-30217)
	4-216, gnl\|fr1\|chrUn (72981777-72981598)
	4-216, gnl\|hg17\|chrX (54379618-54379803)
	4-216, gnl\|Hg17\|chrX (54379831-54379619)
	4-216, gnl\|mm7\|chrX (145825983-145825798)
	4-216, gnl\|Mm7\|chrX (145825768-145825980)
	4-216, gnl\|monDom2\|scaffold_255 (266088-266254)
	4-216, gnl\|oryCun1\|scaffold_100277 (8988-8803)
	4-216, gnl\|panTro1\|chrX (55641078-55641263)
	4-216, gnl\|rheMac2\|chrX (52790289-52790474)
	4-216, gnl\|rn3\|chrX (40439603-40439418)
	4-216, gnl\|tetNig1\|chrUn_random (90468500-90468679)
	4-216, gnl\|xenTro1\|scaffold_750 (369622-369413)