Non-Coding RNA Search

rnje24c_b13.y1

Sequence:


               
               CCCGCTGTCTCTGTGTCCTTGTGGCACATCGTGACGTGCTGGTTTCCTTTGTAACTTCCT
TGCTGAAATGATGTCTTAGGCCTGCCAGTGCCAGCTGACCCCTCCACGATGGCTCCACGT
TGTGCTCAGCTTCTGGCCATCGGAGACCCCCTCCCCACATCAGCTTACCTTTGACACCCC
TGCCACATAGATACACAGAAGTTATTTTTTTAACGGATATTTATTTTTTTACATTGGTCA
GTACACAGATTGCCGGTATCCCACCTCAGGGGCTCACACACCAGGGTCACCAGGACAGTC
CCCCTTGGGGGGTGGCGTAGGGGGACCGTCTCAGTGGGCCCTGAGCACCGGACGGCAAAC
GTCCTTCAGAAAGTGCAGCTTGAGTCTTAGAGACGCAATACTGAGCCATGGAGGCAGGCT
GGCCCCTGAAAGCGGGCAATTTCTATGCAGCCTGAGCGCCAGCCCCTCGGACTTCACTCT
GCCTCCTTTCCTTGGGAATTGCTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCTGTCTCTGTGTCCTTGTGGCACATCGTGACGTGCTGGTTTCCTTTGTAACTTCCT
TGCTGAAATGATGTCTTAGGCCTGCCAGTGCCAGCTGACCCCTCCACGATGGCTCCACGT
TGTGCTCAGCTTCTGGCCATCGGAGACCCCCTCCCCACATCAGCTTACCTTTGACACCCC
TGCCACATAGATACACAGAAGTTATTTTTTTAACGGATATTTATTTTTTTACATTGGTCA
GTACACAGATTGCCGGTATCCCACCTCAGGGGCTCACACACCAGGGTCACCAGGACAGTC
CCCCTTGGGGGGTGGCGTAGGGGGACCGTCTCAGTGGGCCCTGAGCACCGGACGGCAAAC
GTCCTTCAGAAAGTGCAGCTTGAGTCTTAGAGACGCAATACTGAGCCATGGAGGCAGGCT
GGCCCCTGAAAGCGGGCAATTTCTATGCAGCCTGAGCGCCAGCCCCTCGGACTTCACTCT
GCCTCCTTTCCTTGGGAATTGCTCACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               361-477, - strand, RNAz p=0.702063

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-477, - strand, RNAz p=0.702063

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               276-401, - strand, RNAmicro p=0.976265
               

               
               281-373, + strand, RNAmicro p=0.918736

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               276-401, - strand, RNAmicro p=0.976265
               

               
               281-373, + strand, RNAmicro p=0.918736

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-477, gnl|bosTau2|chr7 (17933145-17933618)
               

               
               11-477, gnl|Hg17|chr19 (2380978-2380547)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-477, gnl|bosTau2|chr7 (17933145-17933618)
               

               
               11-477, gnl|Hg17|chr19 (2380978-2380547)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	276-401, - strand, RNAmicro p=0.976265
	281-373, + strand, RNAmicro p=0.918736

	11-477, gnl\|bosTau2\|chr7 (17933145-17933618)
	11-477, gnl\|Hg17\|chr19 (2380978-2380547)