Non-Coding RNA Search

rnje27c_f15.y1

Sequence:


               
               GCGATGGCGCGGAACGTGCTGTATCCTCTGTACCAGCTGGGCAACCCCCAGCTGCGGGTC
TTCCGCACCAACTTCTTCATCCAGCTGGTGCGGCCTGGCACAGCCCAGCCTGAGGACACT
GTGCAGTTCCGGATCCCCATGGAGATGACCAGAGTGGACCTCAGGAATTATCTCGAGCGC
ATTTACAACGTGCCTGTGGCCGCCGTGCGGACGAGGGTGCAGTACGGTTCCAACAGGAGG
AGGGATCACAGGAACATCAGGATAAAAAAGCCAGACTACAAGGTGGCCTATGTGCAGCTG
GCGCTCGGGCAGACCTTCACCTTCCCAGACCTGTTTCCCGAGAGGAAGGGCGCCTCTGTG
GACGTGGACGTCCGGGACCAGGTCCTGGAGGACCAGCGGCAGAAGCACAGCCCCGACCCC
CGGCGCGGGGGTGTCCCCGGCTGGTTCGGCCTGTGACGTGGGGCCGTGACAACGTGAATA
AAAGTGCTGCCTGTGGAAAAAAAAAAAAAAAACCTCGTGCCGAATTCGGCACGAGGGCAT
CGAGGTCACCCACGTCCCTTCAGGATGAAAGCCGTGGTGCTGACCTTGGCTGTGCTCTTC
CT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATGGCGCGGAACGTGCTGTATCCTCTGTACCAGCTGGGCAACCCCCAGCTGCGGGTC
TTCCGCACCAACTTCTTCATCCAGCTGGTGCGGCCTGGCACAGCCCAGCCTGAGGACACT
GTGCAGTTCCGGATCCCCATGGAGATGACCAGAGTGGACCTCAGGAATTATCTCGAGCGC
ATTTACAACGTGCCTGTGGCCGCCGTGCGGACGAGGGTGCAGTACGGTTCCAACAGGAGG
AGGGATCACAGGAACATCAGGATAAAAAAGCCAGACTACAAGGTGGCCTATGTGCAGCTG
GCGCTCGGGCAGACCTTCACCTTCCCAGACCTGTTTCCCGAGAGGAAGGGCGCCTCTGTG
GACGTGGACGTCCGGGACCAGGTCCTGGAGGACCAGCGGCAGAAGCACAGCCCCGACCCC
CGGCGCGGGGGTGTCCCCGGCTGGTTCGGCCTGTGACGTGGGGCCGTGACAACGTGAATA
AAAGTGCTGCCTGTGGAAAAAAAAAAAAAAAACCTCGTGCCGAATTCGGCACGAGGGCAT
CGAGGTCACCCACGTCCCTTCAGGATGAAAGCCGTGGTGCTGACCTTGGCTGTGCTCTTC
CT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2406568|gb|AAB70459.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2406568|gb|AAB70459.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-159, - strand, RNAz p=0.953924

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.953924

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-512, gnl|bosTau2|chr10 (2082304-2082825)
               

               
               1-512, gnl|Hg17|chr11 (1928705-1934247)
               

               
               1-512, gnl|Mm7|chr2 (74435611-74435074)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-512, gnl|bosTau2|chr10 (2082304-2082825)
               

               
               1-512, gnl|Hg17|chr11 (1928705-1934247)
               

               
               1-512, gnl|Mm7|chr2 (74435611-74435074)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-512, gnl\|bosTau2\|chr10 (2082304-2082825)
	1-512, gnl\|Hg17\|chr11 (1928705-1934247)
	1-512, gnl\|Mm7\|chr2 (74435611-74435074)