Non-Coding RNA Search

rnje28c_b12.y1

Sequence:


               
               CCTCACTCCCAGCAGCCAGTGCATTACTCGCTCCTCTGGGCTCCCACACCACTTTGTATA
TACCTCTTATTGTAGCACTTAGCACACAGTAGCTCCTTAGCTATGTGTTTATGTATGTTT
TCCCTCCAATAgactgtgagctcctcaaggacagggactgtgtgttagtcactgatgtat
ccccagcgcctagcacagtgcctggcacacagtaggtgctcaataaatgtttATGGAAAG
AAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCACTCCCAGCAGCCAGTGCATTACTCGCTCCTCTGGGCTCCCACACCACTTTGTATA
TACCTCTTATTGTAGCACTTAGCACACAGTAGCTCCTTAGCTATGTGTTTATGTATGTTT
TCCCTCCAATAgactgtgagctcctcaaggacagggactgtgtgttagtcactgatgtat
ccccagcgcctagcacagtgcctggcacacagtaggtgctcaataaatgtttATGGAAAG
AAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               125-242, + strand, RNAz p=0.991077

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-242, + strand, RNAz p=0.991077

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               125-234, CR851356 Normalized and Subtracted bovine endometrium tissues 
(emb|CR851356.2|), blast E-value=0, identity=100% 
               

               
               125-240, UI-R-CX0-bwx-g-01-0-UI.s1 UI-R-CX0 Rattus norvegicus cDNA clone 
(gb|BI278855.1|), blast E-value=4e-32, identity=91.45% 
               

               
               125-234, 1Duo19F06a Bos taurus Duodenum #1 library Bos taurus cDNA, mRNA 
(gb|BM431535.1|), blast E-value=0, identity=100% 
               

               
               125-234, LeukoN5_5_B11.b1_A027 Unstimulated peripheral blood leukocytes N5 
(gb|CD535885.1|), blast E-value=0, identity=100% 
               

               
               125-240, UI-R-BJ1-avf-f-05-0-UI.s10 UI-R-BJ1 Rattus norvegicus cDNA clone 
(gb|CK844121.1|), blast E-value=4e-32, identity=91.45% 
               

               
               125-234, LIB4004-029-Q1-K1-H1 LIB4004 Canis familiaris cDNA clone 
(gb|DN402738.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               125-234, CR851356 Normalized and Subtracted bovine endometrium tissues 
(emb|CR851356.2|), blast E-value=0, identity=100% 
               

               
               125-240, UI-R-CX0-bwx-g-01-0-UI.s1 UI-R-CX0 Rattus norvegicus cDNA clone 
(gb|BI278855.1|), blast E-value=4e-32, identity=91.45% 
               

               
               125-234, 1Duo19F06a Bos taurus Duodenum #1 library Bos taurus cDNA, mRNA 
(gb|BM431535.1|), blast E-value=0, identity=100% 
               

               
               125-234, LeukoN5_5_B11.b1_A027 Unstimulated peripheral blood leukocytes N5 
(gb|CD535885.1|), blast E-value=0, identity=100% 
               

               
               125-240, UI-R-BJ1-avf-f-05-0-UI.s10 UI-R-BJ1 Rattus norvegicus cDNA clone 
(gb|CK844121.1|), blast E-value=4e-32, identity=91.45% 
               

               
               125-234, LIB4004-029-Q1-K1-H1 LIB4004 Canis familiaris cDNA clone 
(gb|DN402738.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-242, gnl|bosTau2|chrX (3921324-3921083)
               

               
               1-242, gnl|Hg17|chrX (128921261-128920731)
               

               
               1-242, gnl|Mm7|chrX (43503540-43503302)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-242, gnl|bosTau2|chrX (3921324-3921083)
               

               
               1-242, gnl|Hg17|chrX (128921261-128920731)
               

               
               1-242, gnl|Mm7|chrX (43503540-43503302)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	125-234, CR851356 Normalized and Subtracted bovine endometrium tissues (emb\|CR851356.2\|), blast E-value=0, identity=100%
	125-240, UI-R-CX0-bwx-g-01-0-UI.s1 UI-R-CX0 Rattus norvegicus cDNA clone (gb\|BI278855.1\|), blast E-value=4e-32, identity=91.45%
	125-234, 1Duo19F06a Bos taurus Duodenum #1 library Bos taurus cDNA, mRNA (gb\|BM431535.1\|), blast E-value=0, identity=100%
	125-234, LeukoN5_5_B11.b1_A027 Unstimulated peripheral blood leukocytes N5 (gb\|CD535885.1\|), blast E-value=0, identity=100%
	125-240, UI-R-BJ1-avf-f-05-0-UI.s10 UI-R-BJ1 Rattus norvegicus cDNA clone (gb\|CK844121.1\|), blast E-value=4e-32, identity=91.45%
	125-234, LIB4004-029-Q1-K1-H1 LIB4004 Canis familiaris cDNA clone (gb\|DN402738.1\|), blast E-value=0, identity=100%

	1-242, gnl\|bosTau2\|chrX (3921324-3921083)
	1-242, gnl\|Hg17\|chrX (128921261-128920731)
	1-242, gnl\|Mm7\|chrX (43503540-43503302)