Non-Coding RNA Search

rnje28c_m1.y1

Sequence:


               
               CTTAACCTGGTCCTGGCGCTCATCTACAACCTGGTCGGGATACCCATCGCCGCAGGTGTC
TTCATGCCCATCGGCATCGTGCTGCAGCCGTGGATGGGCTCAGCGGCCATGGCGGCCTCC
TCCGTGTCCGTGGTCCTCTCGTCACTGCAGCTCAAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAACCTGGTCCTGGCGCTCATCTACAACCTGGTCGGGATACCCATCGCCGCAGGTGTC
TTCATGCCCATCGGCATCGTGCTGCAGCCGTGGATGGGCTCAGCGGCCATGGCGGCCTCC
TCCGTGTCCGTGGTCCTCTCGTCACTGCAGCTCAAGTGC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               43-158, gnl|bosTau2|chr12 (11145248-11145134)
               

               
               43-158, gnl|canFam2|chr22 (3166869-3166741)
               

               
               43-158, gnl|danRer3|chr23 (9765965-9765836)
               

               
               43-158, gnl|echTel1|scaffold_292402 (11307-11442)
               

               
               43-158, gnl|fr1|chrUn (29101582-29101465)
               

               
               43-158, gnl|galGal2|chr1 (162425784-162425914)
               

               
               43-158, gnl|hg17|chr13 (51407721-51407851)
               

               
               43-158, gnl|Hg17|chr13 (51407844-51407730)
               

               
               43-158, gnl|loxAfr1|scaffold_26073 (22319-22447)
               

               
               43-158, gnl|mm7|chr8 (20778455-20778583)
               

               
               43-158, gnl|Mm7|chr8 (20778576-20778463)
               

               
               43-158, gnl|monDom2|scaffold_15 (54333829-54333699)
               

               
               43-158, gnl|oryCun1|scaffold_82446 (3895-4023)
               

               
               43-158, gnl|panTro1|chr14_random (17563653-17563783)
               

               
               43-158, gnl|rheMac2|chr17 (30757720-30757850)
               

               
               43-158, gnl|rn3|chr16 (74678338-74678209)
               

               
               43-158, gnl|tetNig1|chr1 (1149802-1149911)
               

               
               43-158, gnl|xenTro1|scaffold_223 (1202315-1202179)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-158, gnl|bosTau2|chr12 (11145248-11145134)
               

               
               43-158, gnl|canFam2|chr22 (3166869-3166741)
               

               
               43-158, gnl|danRer3|chr23 (9765965-9765836)
               

               
               43-158, gnl|echTel1|scaffold_292402 (11307-11442)
               

               
               43-158, gnl|fr1|chrUn (29101582-29101465)
               

               
               43-158, gnl|galGal2|chr1 (162425784-162425914)
               

               
               43-158, gnl|hg17|chr13 (51407721-51407851)
               

               
               43-158, gnl|Hg17|chr13 (51407844-51407730)
               

               
               43-158, gnl|loxAfr1|scaffold_26073 (22319-22447)
               

               
               43-158, gnl|mm7|chr8 (20778455-20778583)
               

               
               43-158, gnl|Mm7|chr8 (20778576-20778463)
               

               
               43-158, gnl|monDom2|scaffold_15 (54333829-54333699)
               

               
               43-158, gnl|oryCun1|scaffold_82446 (3895-4023)
               

               
               43-158, gnl|panTro1|chr14_random (17563653-17563783)
               

               
               43-158, gnl|rheMac2|chr17 (30757720-30757850)
               

               
               43-158, gnl|rn3|chr16 (74678338-74678209)
               

               
               43-158, gnl|tetNig1|chr1 (1149802-1149911)
               

               
               43-158, gnl|xenTro1|scaffold_223 (1202315-1202179)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nje (0.16592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	43-158, gnl\|bosTau2\|chr12 (11145248-11145134)
	43-158, gnl\|canFam2\|chr22 (3166869-3166741)
	43-158, gnl\|danRer3\|chr23 (9765965-9765836)
	43-158, gnl\|echTel1\|scaffold_292402 (11307-11442)
	43-158, gnl\|fr1\|chrUn (29101582-29101465)
	43-158, gnl\|galGal2\|chr1 (162425784-162425914)
	43-158, gnl\|hg17\|chr13 (51407721-51407851)
	43-158, gnl\|Hg17\|chr13 (51407844-51407730)
	43-158, gnl\|loxAfr1\|scaffold_26073 (22319-22447)
	43-158, gnl\|mm7\|chr8 (20778455-20778583)
	43-158, gnl\|Mm7\|chr8 (20778576-20778463)
	43-158, gnl\|monDom2\|scaffold_15 (54333829-54333699)
	43-158, gnl\|oryCun1\|scaffold_82446 (3895-4023)
	43-158, gnl\|panTro1\|chr14_random (17563653-17563783)
	43-158, gnl\|rheMac2\|chr17 (30757720-30757850)
	43-158, gnl\|rn3\|chr16 (74678338-74678209)
	43-158, gnl\|tetNig1\|chr1 (1149802-1149911)
	43-158, gnl\|xenTro1\|scaffold_223 (1202315-1202179)