Non-Coding RNA Search

rnje28c_n24.y1

Sequence:


               
               TGAAGAGCTGGCTGAAAAAGATGACATCAAGTACCGAACATCCATTGAGGAAAAAATGAC
TGCTGCCCGCATTAGAAAGTGCCACAAGTGTGGAACTGGCCTCATCAAGTCGGAAGGCTG
CAACCGCATGTCCTGCCGCTGTGGCGCCCAGATGTGCTACCTCTGCCGAGTGTCTATCAA
CGGCTATGACCATTTCTGCCAGCACCCTCGCTCGCCGGGAGCCCCCTGCCAGGAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGAGCTGGCTGAAAAAGATGACATCAAGTACCGAACATCCATTGAGGAAAAAATGAC
TGCTGCCCGCATTAGAAAGTGCCACAAGTGTGGAACTGGCCTCATCAAGTCGGAAGGCTG
CAACCGCATGTCCTGCCGCTGTGGCGCCCAGATGTGCTACCTCTGCCGAGTGTCTATCAA
CGGCTATGACCATTTCTGCCAGCACCCTCGCTCGCCGGGAGCCCCCTGCCAGGAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61840939|ref|XP_585564.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840939|ref|XP_585564.1|

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               46-237, gnl|bosTau2|chr25 (36983636-36983827)
               

               
               46-237, gnl|canFam2|chr6 (15336452-15336197)
               

               
               46-237, gnl|danRer3|chr3 (37287422-37287169)
               

               
               46-237, gnl|dasNov1|scaffold_28751 (4107-4362)
               

               
               46-237, gnl|echTel1|scaffold_223524 (7987-7724)
               

               
               46-237, gnl|galGal2|chr14 (6317724-6317981)
               

               
               46-237, gnl|hg17|chr7 (5454021-5454277)
               

               
               46-237, gnl|Hg17|chr7 (5454248-5454057)
               

               
               46-237, gnl|loxAfr1|scaffold_11386 (37905-37639)
               

               
               46-237, gnl|mm7|chr5 (142048553-142048812)
               

               
               46-237, gnl|Mm7|chr5 (142048780-142048589)
               

               
               46-237, gnl|monDom2|scaffold_17 (6023445-6023703)
               

               
               46-237, gnl|oryCun1|scaffold_177128 (31785-31533)
               

               
               46-237, gnl|panTro1|chr6 (5881565-5881821)
               

               
               46-237, gnl|rheMac2|chr3 (43328353-43328097)
               

               
               46-237, gnl|rn3|chr12 (11986025-11985768)
               

               
               46-237, gnl|xenTro1|scaffold_48 (1852314-1852058)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-237, gnl|bosTau2|chr25 (36983636-36983827)
               

               
               46-237, gnl|canFam2|chr6 (15336452-15336197)
               

               
               46-237, gnl|danRer3|chr3 (37287422-37287169)
               

               
               46-237, gnl|dasNov1|scaffold_28751 (4107-4362)
               

               
               46-237, gnl|echTel1|scaffold_223524 (7987-7724)
               

               
               46-237, gnl|galGal2|chr14 (6317724-6317981)
               

               
               46-237, gnl|hg17|chr7 (5454021-5454277)
               

               
               46-237, gnl|Hg17|chr7 (5454248-5454057)
               

               
               46-237, gnl|loxAfr1|scaffold_11386 (37905-37639)
               

               
               46-237, gnl|mm7|chr5 (142048553-142048812)
               

               
               46-237, gnl|Mm7|chr5 (142048780-142048589)
               

               
               46-237, gnl|monDom2|scaffold_17 (6023445-6023703)
               

               
               46-237, gnl|oryCun1|scaffold_177128 (31785-31533)
               

               
               46-237, gnl|panTro1|chr6 (5881565-5881821)
               

               
               46-237, gnl|rheMac2|chr3 (43328353-43328097)
               

               
               46-237, gnl|rn3|chr12 (11986025-11985768)
               

               
               46-237, gnl|xenTro1|scaffold_48 (1852314-1852058)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	46-237, gnl\|bosTau2\|chr25 (36983636-36983827)
	46-237, gnl\|canFam2\|chr6 (15336452-15336197)
	46-237, gnl\|danRer3\|chr3 (37287422-37287169)
	46-237, gnl\|dasNov1\|scaffold_28751 (4107-4362)
	46-237, gnl\|echTel1\|scaffold_223524 (7987-7724)
	46-237, gnl\|galGal2\|chr14 (6317724-6317981)
	46-237, gnl\|hg17\|chr7 (5454021-5454277)
	46-237, gnl\|Hg17\|chr7 (5454248-5454057)
	46-237, gnl\|loxAfr1\|scaffold_11386 (37905-37639)
	46-237, gnl\|mm7\|chr5 (142048553-142048812)
	46-237, gnl\|Mm7\|chr5 (142048780-142048589)
	46-237, gnl\|monDom2\|scaffold_17 (6023445-6023703)
	46-237, gnl\|oryCun1\|scaffold_177128 (31785-31533)
	46-237, gnl\|panTro1\|chr6 (5881565-5881821)
	46-237, gnl\|rheMac2\|chr3 (43328353-43328097)
	46-237, gnl\|rn3\|chr12 (11986025-11985768)
	46-237, gnl\|xenTro1\|scaffold_48 (1852314-1852058)