rnje29c_e16.y1
|
CATGATATTTGTGCACACTTATTAAGTATTGAAGCTTAATAAATTATTGTGTTCTGGTGC
CAAAGGGAGCCAACCAGCACTTAGGCGGTGGCTAGTTTATGTGTGACTTCACCGAAACGT
GGAGGTCCGTGGTATTTGCTAAACTAGGTGTGTATCAGAGTATCTTAAACTTTTACAGAT
TTTCATTATTTAAAAAAATGAggagttcccattgtggctcagtggaaacgaatccgactg
gcatccatgaggatgcaggttcaatccctggcctcgctcagtgggttatggatccggtgt
tgccgtgagctgtggtgcaggtcgcagacgtggctcagatctggcatgctgtggctgtgg
catgggcctgcaactgtatctctgat
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CATGATATTTGTGCACACTTATTAAGTATTGAAGCTTAATAAATTATTGTGTTCTGGTGC
CAAAGGGAGCCAACCAGCACTTAGGCGGTGGCTAGTTTATGTGTGACTTCACCGAAACGT
GGAGGTCCGTGGTATTTGCTAAACTAGGTGTGTATCAGAGTATCTTAAACTTTTACAGAT
TTTCATTATTTAAAAAAATGAggagttcccattgtggctcagtggaaacgaatccgactg
gcatccatgaggatgcaggttcaatccctggcctcgctcagtgggttatggatccggtgt
tgccgtgagctgtggtgcaggtcgcagacgtggctcagatctggcatgctgtggctgtgg
catgggcctgcaactgtatctctgat
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-148, DB357978 HEMBA1 Homo sapiens cDNA clone HEMBA1006085 3', mRNA
(dbj|DB357978.1|), blast E-value=2e-31, identity=87.16% |
|
1-112, 723410 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB463053.1|),
blast E-value=5e-32, identity=91.07% |
|
1-112, 725714 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB464501.1|),
blast E-value=8e-34, identity=91.96% |
|
1-112, 768824 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB535406.1|),
blast E-value=8e-34, identity=91.96% |
|
1-112, 960300 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK771889.1|),
blast E-value=8e-34, identity=91.96% |
|
1-112, UMC-bend_0A02-022-g08 Day 18 Uterus from a pregnant animal bend Bos
(gb|CN999823.1|), blast E-value=8e-34, identity=91.96% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1-148, DB357978 HEMBA1 Homo sapiens cDNA clone HEMBA1006085 3', mRNA
(dbj|DB357978.1|), blast E-value=2e-31, identity=87.16% |
|
1-112, 723410 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB463053.1|),
blast E-value=5e-32, identity=91.07% |
|
1-112, 725714 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB464501.1|),
blast E-value=8e-34, identity=91.96% |
|
1-112, 768824 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB535406.1|),
blast E-value=8e-34, identity=91.96% |
|
1-112, 960300 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK771889.1|),
blast E-value=8e-34, identity=91.96% |
|
1-112, UMC-bend_0A02-022-g08 Day 18 Uterus from a pregnant animal bend Bos
(gb|CN999823.1|), blast E-value=8e-34, identity=91.96% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
